CRI-iAtlas/shiny-iatlas
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
RApache-2.0
Issues
- 8
can I use my own subtype tcga data to analyse immune features difference?
#215 opened by worker000000 - 2
Allow access to full IO expression set from app
#210 opened by vthorsson - 4
data/io folder is missing
#208 opened by daxiagithub - 0
IO Response Module
#177 opened by andrewelamb - 2
Update IO Target Module with Fall 2020 data update
#200 opened by vthorsson - 0
violin plot reordering (and boxplots!)
#192 opened by Gibbsdavidl - 0
- 0
Edits on the Immune Subtype Classifier tool
#199 opened by heimannch - 3
Check if install works on Rv4.0.0
#197 opened by ychae - 0
Include normal tissue for comparison
#128 opened by vthorsson - 0
Upload your own gene sets and score those
#129 opened by vthorsson - 4
error -- no plots on default loading
#196 opened by Gibbsdavidl - 2
shiny::runTests()
#193 opened by alandipert - 0
Copy number module finished
#170 opened by andrewelamb - 2
Cell image module finished
#171 opened by andrewelamb - 1
- 4
- 0
Cytokine network module finished
#169 opened by andrewelamb - 0
v1.2.0 pre-release checklist
#167 opened by jaeddy - 0
Release 1.2 to staging
#172 opened by andrewelamb - 16
Immunomodulator data file - multiple values
#143 opened by vthorsson - 5
- 1
- 5
Immune trends correlation issue
#152 opened by andrewelamb - 3
Row order of the heatmap in the Correlations section of Immune Feature Trends
#163 opened by vthorsson - 3
Make it clear selection box also includes incremental string search (e.g. Variables in Immunomodulator Module)
#162 opened by vthorsson - 3
README refers to a deprecated method for deployment
#139 opened by vthorsson - 0
Immune trends correlation issue in v2.0
#165 opened by andrewelamb - 2
Receive notifications of major versions
#124 opened by vthorsson - 4
PAAD missing from list
#142 opened by Gibbsdavidl - 0
Create submodules
#146 opened by andrewelamb - 11
- 3
TIL image viewer down.
#151 opened by Gibbsdavidl - 2
More clarity / options on correlation metrics
#149 opened by vthorsson - 1
Log scale display or log-transformed data needed for some variables display in violin plots
#150 opened by vthorsson - 0
- 2
Concordance Index in clinical outcomes not working
#140 opened by vthorsson - 1
- 2
- 2
- 6
Fix Clinical Outcomes when ploting TCGA subtypes
#132 opened by andrewelamb - 2
Edits to TIL map description text
#122 opened by vthorsson - 2
Provide Information on TCGA Subtypes
#125 opened by vthorsson - 2
Carry TCGA subtype colors into app when available
#131 opened by vthorsson - 2
- 0
Add heatmap correlation choice.
#119 opened by andrewelamb - 0
- 1
Data integration
#120 opened by andrewelamb - 1
Prioritize suggestions from conference
#121 opened by andrewelamb - 0
Improve static text descriptions
#115 opened by vthorsson