cancer
There are 673 repositories under cancer topic.
IARCbioinfo/IARC-nf
List of IARC bioinformatics nextflow pipelines
kaushikjadhav01/Cancer-Donation-Portal-Python-Flask-App
Flask App for Cancer Donation Portal using basic Python, SQLite3, HTML, CSS and Javascript
cnio-bu/beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
jakelever/cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
zhangxiaoyu11/OmiEmbed
Multi-task deep learning framework for multi-omics data analysis
griffithlab/civic-server
Backend Server for CIViC Project
mawady/bus-segmentation
MATLAB implementation to segment breast lesions in ultrasound images (ICIAR 2016)
alkodsi/ctDNAtools
R package to work with ctDNA sequencing data
broadinstitute/cell-health
Predicting Cell Health with Morphological Profiles
greenelab/RNAseq_titration_results
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
Oshlack/MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
jhole89/classifying-cancer
A Python-Tensorflow neural network for classifying cancer data
taznux/lung-image-analysis
A basic framework for pulmonary nodule detection and characterization in CT
JieZheng-ShanghaiTech/KG4SL
Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
EIDOSLAB/UNITOPATHO
Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.2021.9506198
gsurma/histopathologic_cancer_detector
CNN histopathologic tumor identifier.
ajitjohnson/imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
IARC-CSU/CanReg5
CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data.
OpenGene/FusionDirect.jl
(No maintenance) Detect gene fusion directly from raw fastq files
breck7/CancerDB
CancerDB: a computable encyclopedia about cancer.
Venka97/Skin-cancer-image-classification
Skin cancer classification using Inceptionv3
jakelever/civicmine
Text mining cancer biomarkers for the CIVIC database
Jonas1312/PFA-ScanNet
PFA-ScanNet: Pyramidal Feature Aggregation With Synergistic Learning for Breast Cancer Metastasis Analysis (Architecture Only Pytorch Implementation).
seandavi/ci4cc-informatics-resources
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
arnabuchiha/SkinSense
🎗 This is an Android app to detect melanoma skin cancer using tensorflow mobile.
genescf/GeneSCF
Gene Set Clustering based on Functional annotation
greenelab/pdx_exomeseq
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
mikessh/mageri
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
ndbrown6/MSK-GRAIL-TECHVAL
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
sigven/cacao
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
cognoma/cancer-data
TCGA data acquisition and processing for Project Cognoma
fredhutchio/r_intro
four class intro to R: basic syntax, data manipulation, data viz
kmezhoud/bioCancer
:cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
dijorajsenroy/skin-cancer-detection-app
3-layered approach to detecting cancer, melanoma and allergies with state-of-the-art Tensorflow models, integrated into an app with exciting features using Flutter Android development framework.
KarchinLab/HotMAPS_2016
Detects hotspot regions for somatic mutations in 3D protein structures