cnio-bu/beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
RNOASSERTION
Pinned issues
Table of Beyondcell scores for a specific drug or signature for each cell barcodes
#133 opened by tc86
Closed2
Issues
- 0
- 1
Error in GenerateGenesets(PSc)
#154 opened by AcetylCoALab - 9
Error about GenerateGenesets
#129 opened by simaxiaoyao - 2
Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters): function 'as_cholmod_sparse' not provided by package 'Matrix'
#142 opened by wuyilin1234 - 0
Dependency errors
#151 opened by mj-jimenez - 0
error in bcRegressout
#149 opened by Lukadon77 - 1
Error in bcRegressOut
#148 opened by mpaya - 0
NA values in mean of ranked table
#147 opened by mpaya - 0
Rank order
#146 opened by mpaya - 1
GenerateGenesets
#145 opened by z0402 - 0
- 0
bc4Squares
#143 opened by kris-nader - 2
Error in bcRanks residuals computation
#135 opened by mj-jimenez - 4
Error in bcRanks
#120 opened by mj-jimenez - 1
- 2
Table of Beyondcell scores for a specific drug or signature for each cell barcodes
#133 opened by tc86 - 0
- 1
Error in bc4Squares title
#122 opened by mj-jimenez - 1
Topnames not working with drug names
#123 opened by mj-jimenez - 0
- 1
Add no.missing argument to bcScore
#113 opened by mj-jimenez - 0
bcScore returns NaN values when expr.thres = 0
#114 opened by mj-jimenez - 1
beyondcell can not be run in windows?
#107 opened by Crick0509 - 1
- 3
Error in result[sigs, cells, drop = FALSE] : subscript out of bounds in bcRegressOut
#106 opened by SGMartin - 1
- 0
Add a linter to the CI
#105 opened by SGMartin - 2
Imputing normalized BCS...
#67 opened by dys1997 - 1
Update beyondcell recipe
#84 opened by SGMartin - 1
Remove umap-learn
#101 opened by mj-jimenez - 1
Correct message in bcScore
#98 opened by mj-jimenez - 1
Error (test-GenerateGenesets.R:11): errors
#90 opened by mj-jimenez - 0
Remove print line in bcUMAP
#94 opened by mj-jimenez - 0
Error (test-bcRegressOut.R:187): errors
#78 opened by mj-jimenez - 0
Failure (test-bcRegressOut.R:224): warnings
#79 opened by mj-jimenez - 0
- 0
Failure in test-bcRegressOut.R messages
#81 opened by mj-jimenez - 1
Failure (test-bcScore.R:178): errors
#86 opened by mj-jimenez - 1
Failure (test-bcScore.R:198): warnings
#87 opened by mj-jimenez - 1
Failure in test-bcScore.R messages
#88 opened by mj-jimenez - 1
Failure in test-bcScore.R default values
#89 opened by mj-jimenez - 2
- 4
- 0
Replace qusages::read.gmt with a custom function
#70 opened by SGMartin - 1
bcMerge on a list
#69 opened by SGMartin - 0
Remove see dependency in bcCellCycle
#73 opened by SGMartin - 2
Add r-hdf5r as dependency
#76 opened by SGMartin - 2
- 1
- 1