Oshlack/MINTIE

Issues

• SLURM submission limited to PBSpro installs

  #20 opened 2 years ago by lesleygray
  9

• Error in Testing MINTIE

  #39 opened 4 months ago by shinobu384
  6

• Key error: 'chrchr19'

  #38 opened 9 months ago by RoopanGiri
  3

• Replace gmap with minimap2 in align_contigs_against_genome

  #37 opened 10 months ago by nadiadavidson
  2

• How to use MINTIE with Uncompressed FASTQ Files?

  #36 opened a year ago by sumitm89
  1

• No space left on device

  #35 opened a year ago by luxinyi197
  1

• IIT file /data/miniconda3/envs/mintie/share/mintie-0.4.2-0/ref/gmap_genome/gmap_genome.chromosome.iit is not valid

  #34 opened a year ago by ChiaraF32
  3

• Could not initialize class org.codehaus.groovy.vmplugin.v7.Java7

  #33 opened a year ago by ChiaraF32
  2

• Could not initialize class org.codehaus.groovy.vmplugin.v7.Java7

  #26 opened a year ago by deb0612
  3

• The pattern provided did not match

  #32 opened a year ago by npatel-ah
  4

• Pipeline failed at Assemble stage

  #29 opened a year ago by DrShamy
  3

• Variant definitions

  #31 opened a year ago by yasin-uzun
  1

• Running MINTIE without control and without bpipe

  #30 opened a year ago by yasin-uzun
  2

• Installation problem (environment)

  #28 opened a year ago by yasin-uzun
  4

• Missing references.groovy file

  #27 opened a year ago by DrShamy
  1

• can't manally construct reference for hg19

  #25 opened 2 years ago by KeqiangYan
  1

• Cannot setup reference

  #24 opened 2 years ago by ldenti
  2

• error on test run

  #23 opened 2 years ago by alexyfyf
  1

• Scope of application of MINTIE

  #21 opened 2 years ago by sunshichao0916
  1

• references.groovy file when running test

  #19 opened 2 years ago by tijeco
  2

• Cluster Setup using conda environments

  #18 opened 3 years ago by scuttlebud
  1

• Docker image?

  #17 opened 3 years ago by abalter
  2

• Running MINTIE with Single end dataset

  #16 opened 3 years ago by aswathyseb
  1

• Expected output file all/eq_classes_de.txt in stage run_de (all) could not be found

  #15 opened 3 years ago by justqzt
  3

• Question about interpretation of cpos

  #14 opened 3 years ago by raerose01
  3

• Recommended performance optimisation for filter_fasta.py

  #13 opened 3 years ago by h-joshi
  1

• Guidance around key parameters

  #12 opened 3 years ago by h-joshi
  2

• annotate_contigs fails in run_test

  #10 opened 3 years ago by pratarora
  1

• Please specify software versions this is tested on

  #11 opened 3 years ago by h-joshi
  1

• URL for Hisat2 broken in install_linux64.sh

  #9 opened 3 years ago by nadiadavidson
  2

• One or more parallel stages aborted

  #8 opened 4 years ago by yanlina0205
  2

• refine_annotations.py: 'DataFrame' object has no attribute 'valid_motif'

  #7 opened 4 years ago by wdecoster
  2

• Pipeline fail at "annotate contigs"

  #4 opened 4 years ago by stephenrdoyle
  1

• Stage post-process fail

  #3 opened 4 years ago by cmayoh
  2

• Appropriate gmap version not found

  #2 opened 4 years ago by violetbrina
  3

• Can't install/run test

  #1 opened 4 years ago by nadiadavidson
  2