wdecoster

Bioinformatics postdoc using short and long read sequencing in neurodegenerative disorders at Rademakers Lab

VIB-UAntwerpAntwerp, Belgium

Pinned Repositories

chopper
Language:Rust160 7 3213
cramino
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
Language:Rust130 5 2511
methplotlib
Plotting tools for nanopore methylation data
Language:Python91 8 3913
nanocomp
Comparison of multiple long read datasets
Language:Python116 3 629
nanofilt
Filtering and trimming of long read sequencing data
Language:Python194 10 5814
nanopack
An overview of all nanopack tools
Language:Python222 9 1216
NanoPlot
Plotting scripts for long read sequencing data
Language:Python443 12 34448
nanoQC
Quality control tools for nanopore sequencing data
Language:Python98 9 179
nanostat
Create statistic summary of an Oxford Nanopore read dataset
Language:Python95 3 3511
STRdust
Tandem repeat genotyping from long reads
Language:Rust8 2 42

wdecoster's Repositories

wdecoster/NanoPlot
Plotting scripts for long read sequencing data
Language:Python443 12 34448
wdecoster/nanopack
An overview of all nanopack tools
Language:Python222 9 1216
wdecoster/nanofilt
Filtering and trimming of long read sequencing data
Language:Python194 10 5814
wdecoster/chopper
Language:Rust160 7 3213
wdecoster/cramino
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
Language:Rust130 5 2511
wdecoster/nanocomp
Comparison of multiple long read datasets
Language:Python116 3 629
wdecoster/nanoQC
Quality control tools for nanopore sequencing data
Language:Python98 9 179
wdecoster/nanostat
Create statistic summary of an Oxford Nanopore read dataset
Language:Python95 3 3511
wdecoster/methplotlib
Plotting tools for nanopore methylation data
Language:Python91 8 3913
wdecoster/nanolyse
Remove lambda phage reads from a fastq file
Language:Python28 3 146
wdecoster/surpyvor
A python wrapper around SURVIVOR
Language:Python20 5 171
wdecoster/kyber
Language:Rust19 2 61
wdecoster/phasius
Language:Rust13 2 11
wdecoster/nanoget
Functions to extract information from Oxford Nanopore sequencing data and alignments
Language:Python11 3 146
wdecoster/nanomath
A few simple math function for other Oxford Nanopore processing scripts
Language:Python9 3 114
wdecoster/PromisingPreprint
A python twitter bot tweeting about preprints reaching an interesting altmetric score
Language:Python8 3 03
wdecoster/STRdust
Tandem repeat genotyping from long reads
Language:Rust8 2 42
wdecoster/nanotest
Small test datasets for testing nanopack scripts and modules
Language:Shell5 3 11
wdecoster/make_arrow
A Rust tool to create an arrow file from a cram/bam file
Language:Rust4 2 0
wdecoster/pathSTR
Repository with code for the analysis of pathogenic STRs in the 1000G ONT resequencing data
Language:Jupyter Notebook3 3 1
wdecoster/BLAZE
SingleCell Nanopore sequencing data analysis
Language:Python1 0
wdecoster/INSurVeyor
An insertion caller for Illumina paired-end WGS data.
Language:C++2 0
wdecoster/minimap2-rs
Language:Rust1 0
wdecoster/misc
A mishmash of scripts written during my PhD
Language:Tcl3 0
wdecoster/modkit
A bioinformatics tool for working with modified bases
Language:Rust1 0
wdecoster/rosalind-in-rust
Language:Rust2 0
wdecoster/Sniffles
Structural variation caller using third generation sequencing
Language:Python1 0
wdecoster/Spectre
Copy number caller for long read data including SNV utilization
Language:Python1 0
wdecoster/straglr
Language:Python0 0
wdecoster/STRling-nf
Nextflow implementation of STRling data flow
Language:Nextflow2 0