wdecoster/cramino

Issues

• Metrics meaning change with mapped BAM?

  #34 opened 20 days ago by juanjo255
  1

• significant differences with samtools flagstat output

  #33 opened a month ago by wangduo-ux
  6

• Report shortened output, e.g. one line

  #32 opened 3 months ago by faulk-lab
  0

• Option to exclude contigs in the reference

  #25 opened 10 months ago by SLAment
  2

• Reads length within specific regions

  #31 opened 5 months ago by Mannyari
  3

• Should --ubam really include secondary alignments?

  #29 opened 7 months ago by fellen31
  3

• Help understanding Normalized read count per chromosome across techinical replicates

  #28 opened 9 months ago by NikoLichi
  4

• Multiple file inputs

  #27 opened 9 months ago by Shians
  3

• Report aligned bases

  #26 opened 9 months ago by Shians
  2

• thread 'main' panicked at 'Unexpected type of Aux for phaseset

  #24 opened 10 months ago by jmcdani
  11

• Write out histogram bin counts rather than length

  #17 opened a year ago by holtgrewe
  2

• Feature: Compute & export data for bivariate plots

  #22 opened a year ago by vejnar
  3

• Optionally output as json

  #5 opened 2 years ago by wdecoster
  1

• Not including chromosome with `_` in the name

  #19 opened a year ago by Adoni5
  4

• thread 'main' panicked at 'index out of bounds: when running with `--karyotype`

  #18 opened a year ago by Adoni5
  0

• Dorado BAM output and stats

  #16 opened a year ago by mattloose
  6

• Improve histograms: use integers for read length and less decimals for identities

  #2 opened a year ago by wdecoster
  1

• More dynamically handle number of bins for read length histogram

  #4 opened a year ago by wdecoster
  1

• Does cramino support unmapped bam?

  #15 opened a year ago by ymcki
  2

• thread 'main' panicked at 'Unexpected type of Aux I32(8) error

  #14 opened a year ago by prasundutta87
  8

• --spliced not supported? (Question)

  #13 opened a year ago by MrKevinDC
  3

• Feature request: filter on rlen/qlen

  #1 opened 2 years ago by wdecoster
  1

• Identities and splicing

  #6 opened 2 years ago by wdecoster
  0

• Mean identity calculated as more than 100%

  #7 opened 2 years ago by danrdanny
  5

• Support older glibc

  #3 opened 2 years ago by wdecoster
  1