Pinned Repositories
HetVPaper
Scripts and pipelines for the Ament et al. (2022) NEE paper on allorecognition genes and reproducive isolation
Letharia
All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia
SpokBlockPaper
Scripts and snakemake pipelines associated with the Spok Block paper
AdaptationDynamics
Code associated to the project "The dynamics of adaptation to stress from standing genetic variation" in Stelkens Lab
datasciencecoursera
Repository for the Data Science Course in Coursera
datasharing
The Leek group guide to data sharing
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
faidotest
Genomics
A collection of scripts related to Genomics
PodosporaGenomes
Code used for the Podospora genomes resource paper
SLAment's Repositories
SLAment/Genomics
A collection of scripts related to Genomics
SLAment/PodosporaGenomes
Code used for the Podospora genomes resource paper
SLAment/AdaptationDynamics
Code associated to the project "The dynamics of adaptation to stress from standing genetic variation" in Stelkens Lab
SLAment/datasciencecoursera
Repository for the Data Science Course in Coursera
SLAment/datasharing
The Leek group guide to data sharing
SLAment/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
SLAment/faidotest
SLAment/Podosporaceae
A small pipeline to analyse marker data into a phylogeny
SLAment/SpecificTE_Marasmius
A pipeline based on Valentina Peona's "SpecificTE" pipeline to detect transposable element (TE) insertions and empty sites, applied to data of Marasmius oreades.
SLAment/table3