Shians
Bioinformatician, biostatistician and biological lifeform. Interested in R, C++ and Javascript for genomic data processing, summarisation and visualisation.
Walter and Eliza Hall @WEHI_researchMelbourne, Australia
Pinned Repositories
scPipe
a pipeline for single cell RNA-seq data analysis
awesome-charting
A curated list of chart and dataviz resources that developers may find useful.
BiocExplorer
CellBench
R package for benchmarking single cell analysis methods
GeoHelper
R script for generating fastq GEO submission information
Glimma
Glimma R package
Glimma-deprecated
index
Intron-reads
NanoMethViz
Shians's Repositories
Shians/Glimma
Glimma R package
Shians/CellBench
R package for benchmarking single cell analysis methods
Shians/NanoMethViz
Shians/index
Shians/GlimmaV2
interactive plots for differential expression analysis
Shians/bam-tag-tools
Shians/BaseR_Intro
Shians/BiocCheck
Shians/BiocFileCache
Manage Files Across Sessions
Shians/cli
Tools for making beautiful & useful command line interfaces
Shians/ClusterCBM
Shians/demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
Shians/differential_methylation_workshop
Shians/dorado
Oxford Nanopore's Basecaller
Shians/DSS
Shians/fastai
The fastai deep learning library
Shians/fastq-read-stats
Shians/motif_writer
Shians/NormCBM
Shians/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Shians/R-Good-Practices
Shians/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Shians/scico
Palettes for R based on the Scientific Colour-Maps
Shians/scPipe
a pipeline for single cell RNA-seq data analysis
Shians/seqdotplot
Shians/shians.github.io
Shians/shians_ggplot_themes
Shians/string_map
A very lightweight wrapper for C++ unordered_maps in Rcpp to map from strings to strings.
Shians/SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells
Shians/TestCIMacOS