Pinned Repositories
biodebrepo
Packages for biology complementing Debian, Ubuntu and Debian Med
failing-disk-reporter
Failing Disk Reporter (FDR): Get a report when a drive (HDD or SDD) is failing via Matrix or Slack. MIRROR
FONtools
JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
GeneAbacus
Counts and profiles sequencing reads within genes, chromosomes or constructs.
LabxDB
Versatile databases for genomic sequencing and lab management
LabxPipe
Genomics pipelines
miRmap
Comprehensive prediction of microRNA target repression strength
notebooks
My Jupyter Notebooks
nwalgo
Needleman-Wunsch Alignment in Go
ReadKnead
Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads
vejnar's Repositories
vejnar/FONtools
JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
vejnar/LabxPipe
Genomics pipelines
vejnar/GeneAbacus
Counts and profiles sequencing reads within genes, chromosomes or constructs.
vejnar/LabxDB
Versatile databases for genomic sequencing and lab management
vejnar/ReadKnead
Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads
vejnar/biodebrepo
Packages for biology complementing Debian, Ubuntu and Debian Med
vejnar/failing-disk-reporter
Failing Disk Reporter (FDR): Get a report when a drive (HDD or SDD) is failing via Matrix or Slack. MIRROR
vejnar/miRmap
Comprehensive prediction of microRNA target repression strength
vejnar/notebooks
My Jupyter Notebooks
vejnar/nwalgo
Needleman-Wunsch Alignment in Go
vejnar/pyfnutils
Small utility functions for Python: logging, parallel tasks, zstd
vejnar/apptainer
Apptainer: Application containers for Linux
vejnar/bowtie2
A fast and sensitive gapped read aligner
vejnar/chromap
Fast alignment and preprocessing of chromatin profiles
vejnar/ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
vejnar/deque
Fast ring-buffer deque (double-ended queue)
vejnar/GeneAbacus-python
Python IO functions for GeneAbacus
vejnar/hts
biogo high throughput sequencing repository
vejnar/LabxDB-tools
This is a mirror for LabxDB tools. Issues and PRs on GitLab.
vejnar/lego
Let's Encrypt client and ACME library written in Go
vejnar/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
vejnar/miRmap1
Comprehensive prediction of microRNA target repression strength
vejnar/paru
Feature packed AUR helper
vejnar/rappdirs
Find OS-specific directories to store data, caches, and logs. A port of python's AppDirs
vejnar/SensorAlarmChart
Tracks Bluetooth Low Energy (BLE) sensors like Freezer Temperature. Sends alarms on Slack or Matrix. Install on Raspberry Pi.
vejnar/skewer
vejnar/starcode
All pairs search and sequence clustering
vejnar/zstd
Zstandard - Fast real-time compression algorithm