Pinned Repositories
512array_Nanolights
Development code for a light interface to the ONT minION device
aln2type
AmpBalanceP
AmpBalance Parallel
audfprint
Landmark-based audio fingerprinting
c_fast5
C code to extract data from fast5 files
flowcellvis
Animated GIF of flow cell performance from sequencing summary file.
iterassemble
An iterative assembler for exploiting transcripts and whole genome reads from hard to assemble genomes.
nanosam
nanopore to bam messing around
RUFigs
RUscripts
Scripts for implementing read until and other examples.
mattloose's Repositories
mattloose/RUscripts
Scripts for implementing read until and other examples.
mattloose/flowcellvis
Animated GIF of flow cell performance from sequencing summary file.
mattloose/512array_Nanolights
Development code for a light interface to the ONT minION device
mattloose/iterassemble
An iterative assembler for exploiting transcripts and whole genome reads from hard to assemble genomes.
mattloose/aln2type
mattloose/crisp_colours
Also known as chips in strange countries. A global standard for crisp/chip packaging colours.
mattloose/cv
My YAML cv and resume.
mattloose/duplex-tools
Splitting of sequence reads by internal adapter sequence search
mattloose/fieldbioinformatics
The ARTIC field bioinformatics pipeline
mattloose/haloferax_2022
Resources For Haloferax
mattloose/hv_rapidCNS2
Run the epi2me-labs wf-human-variation and pipe into rapidCNS2
mattloose/hv_rapidCNS2_mod
Run the epi2me-labs wf-human-variation and pipe into rapidCNS2
mattloose/longreadclub.github.io
mattloose/malaysia2024
ResourcesForIC
mattloose/mattloose.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
mattloose/methylartist
Tools for plotting methylation data in various ways
mattloose/minFQ_BAM
mattloose/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
mattloose/MinoView
MinoView - monitoring minKNOW
mattloose/mockcommunity
Long-read mock community experiments
mattloose/MPXV
Monkeypox virus primer schemes
mattloose/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
mattloose/NA12878
Data and analysis for NA12878 genome on nanopore
mattloose/nanopore-basecalling-scripts
Some simple scripts to ease management and local basecalling of millions of FAST5 files
mattloose/panGPT
A Generative Pre-Trained Transformer Package for Pangenomes
mattloose/pomoxis
Fast, concurrent and real-time analysis components from Oxford Nanopore Research
mattloose/read-paf
Scripts for reading minimap2 PAF files
mattloose/readfish
Read Until scripts
mattloose/smrest
Tumour-only somatic mutation calling using long reads
mattloose/sturgeon