A Rust tool to create an arrow file, containing information about read length, percent identity, and mapping quality from a cram/bam file. The files created by this tool are compatible with NanoPlot and NanoComp.
Download a ready-to-use binary for your system from the releases and add it to a directory on your $PATH .
You may have to change the file permissions to execute it with chmod +x make_arrow
make_arrow [OPTIONS] <INPUT>
Arguments:
<INPUT> cram or bam file (or '-' for stdin)
Options:
-t, --threads <THREADS> Number of parallel decompression threads to use [default: 4]
-o, --output <OUTPUT> Output file name [default: read_metrics.arrow]
-h, --help Print help information
-V, --version Print version information
If you use this tool, please consider citing our publication.