wdecoster/nanostat

Issues

• NanoPlot and NaoStat Errors: site-packages/Bio/File.py", line 72, in as_handle with open(handleish, mode, **kwargs) as fp: TypeError: expected str, bytes or os.PathLike object, not TextIOWrapper

  #42 opened 5 months ago by HW411
  1

• Nanostat report - after nanofilt I got this results:

  #41 opened a year ago by APZPM
  3

• While mean error is properly calculated within reads, is it properly calculated across reads?

  #40 opened 2 years ago by schorlton
  9

• qscore read count discrepancy

  #39 opened 2 years ago by lmolokin
  1

• Numpy issue

  #38 opened 3 years ago by samlipworth
  2

• Barcoded output not available

  #36 opened 3 years ago by santoshe1
  4

• runtime stats

  #19 opened 3 years ago by tolot27
  9

• how the quality score is calculated by nanostat

  #37 opened 3 years ago by ShannonDaddy
  3

• Error UnicodeDecode utf-8

  #35 opened 3 years ago by stanislasmorand
  7

• ValueError: Length of values (5) does not match length of index (2)

  #34 opened 3 years ago by Gyuhee-Ahn
  4

• [Question] Clarification about output from bam files

  #32 opened 4 years ago by shnmunk
  8

• Multithread support for fastq

  #15 opened 7 years ago by MingDeakin
  6

• multithreading doesn't work for fastq files

  #2 opened 7 years ago by tolot27
  7

• the supplementary reads is included in the results

  #31 opened 4 years ago by WellJoea
  3

• release tags?

  #30 opened 4 years ago by smoe
  1

• feature request: output as tsv

  #29 opened 4 years ago by kapsakcj
  6

• running the ccommand

  #28 opened 5 years ago by Dymphan
  3

• Add cram support

  #20 opened 5 years ago by wdecoster
  3

• Memory explosion

  #22 opened 5 years ago by mbhall88
  4

• conda install not working

  #25 opened 5 years ago by BenjaminSchwessinger
  4

• Print output in wide format

  #27 opened 5 years ago by flashton2003
  4

• Error "Package setuptools conflicts " while installing NanoStat.

  #26 opened 5 years ago by shashibioinfo143
  8

• Installing without Pip/condas

  #24 opened 6 years ago by crysclitheroe
  3

• Lengths of sequence and quality values differs

  #23 opened 6 years ago by sgl07007
  3

• Error multiple HD-lines

  #21 opened 6 years ago by sarah872
  1

• Output in tabular format

  #13 opened 6 years ago by davidvilanova
  1

• Wrong stats

  #17 opened 6 years ago by haowenz
  6

• Missing REAME file? leads to failed installation

  #18 opened 6 years ago by mbhall88
  1

• -o and -n are not working togheter

  #16 opened 7 years ago by svennd
  2

• Version throws error

  #14 opened 7 years ago by brucemoran
  4

• -o outdir completely ignored, stdout appears to be in random order

  #12 opened 7 years ago by mw55309
  4

• TypeError: get_input() got an unexpected keyword argument 'barcoded'

  #11 opened 7 years ago by mw55309
  12

• TypeError: write_stats() got an unexpected keyword argument 'datadfs'

  #10 opened 7 years ago by mroosmalen
  3

• "--readtype" function questions

  #8 opened 7 years ago by devonorourke
  1

• (tiny?) feature request

  #7 opened 7 years ago by devonorourke
  6