wdecoster

wdecoster's Stars

• Kanaries/pygwalker

  PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

  Language:Python13.6k81223710

• igiagkiozis/plotly

  Plotly for Rust

  Language:Rust948168690

• wheretrue/biobear

  Work with bioinformatic files using Arrow, Polars, and/or DuckDB

  Language:Rust16533911

• brentp/echtvar

  using all the bits for echt rapid variant annotation and filtering

  Language:Rust14752910

• single-cell-genetics/cellsnp-lite

  Efficient genotyping bi-allelic SNPs on single cells

  Language:C13289411

• google/best

  Bam Error Stats Tool (best): analysis of error types in aligned reads.

  Language:Rust126999

• PacificBiosciences/trgt

  Tandem repeat genotyping and visualization from PacBio HiFi data

  Language:Rust109304810

• KolmogorovLab/Severus

  A tool for somatic structural variant calling using long reads

  Language:Python1065325

• colindaven/awesome-pangenomes

  A list of software for pangenomics

  915317

• HKU-BAL/ClairS

  ClairS - a deep-learning method for long-read somatic small variant calling

  Language:Python786357

• single-cell-genetics/vireo

  Demultiplexing pooled scRNA-seq data with or without genotype reference

  Language:Python7558727

• quinlan-lab/bedder-rs

  an API for intersections of genomic data

  Language:Rust74450

• jguhlin/minimap2-rs

  Rust bindings to minimap2 library

  Language:Rust7273815

• loukesio/ggvolc

  𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation

  Language:R63424

• MarioniLab/miloDE

  Framework for sensitive DE testing (using neighbourhoods)

  Language:R623253

• vembrane/vembrane

  vembrane filters VCF records using python expressions

  Language:Python577195

• fritzsedlazeck/Spectre

  Copy number caller for long read data including SNV utilization

  Language:Python5510383

• fiberseq/fibertools-rs

  Tools for fiberseq data written in rust.

  Language:Rust432395

• PacificBiosciences/svpack

  Structural variant (SV) analysis tools

  Language:Python36893

• pairwise-alignment/pa-bench

  Benchmarking pairwise aligners

  Language:Jupyter Notebook36481

• Clinical-Genomics/stranger

  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

  Language:Python317396

• rchikhi/rust-alignbench

  Pairwise nucleotide alignment benchmark of Rust bindings

  Language:Jupyter Notebook31601

• gymrek-lab/EnsembleTR

  Tools for merging Tandem Repeat VCF files

  Language:Python275124

• lh3/rtgeval

  Wrapper for RTG's vcfeval; DEPRECATED!

  Language:Shell21822

• EliseCoopman/methylmap

  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.

  Language:Python18301

• COMBINE-lab/grangers

  Language:Rust17201

• ekg/pca

  PCA in rust

  Language:Rust14211

• tanghaibao/rust-wfa2

  Rust binding for WFA2-lib

  Language:Rust10415

• jts/nanopore_cfdna

  Language:Groovy220

• SaraAlidadiani/Rosalind-solutions

  Language:Python1