MarioniLab/miloDE

Issues

• Got errors when running tutorial, "error in evaluating the argument 'x' in selecting a method for function 'as.matrix': no slot of name "data" for this object of class "Assay5""

  #41 opened 6 months ago by RongqinChen
  1

• Installation failed. version of Rlang and/or miloR?

  #40 opened 6 months ago by RongqinChen
  4

• Milo-object check in assign_neighborhood misses milo-objects

  #39 opened 6 months ago by MaximilianNuber
  2

• Slow plotting because of .check_sce_milo

  #37 opened 9 months ago by mihem
  6

• How to specify contrasts?

  #38 opened 10 months ago by liz-is
  1

• Number of tested neighbourhoods and other parameters

  #36 opened 10 months ago by Thapeachydude
  3

• Number of specific DE genes higher than number of DE genes?

  #34 opened 10 months ago by mihem
  11

• DE in the presence of DA

  #35 opened 10 months ago by gdagstn
  3

• Problem with get-wgcna_modules

  #33 opened a year ago by HeleneHemmer
  10

• edge_width cannot be changed in plot_milo_by_single_metric

  #32 opened a year ago by mihem
  1

• Certain values of k cause estimate_neighbourhood_sizes() to freeze

  #31 opened a year ago by Budjavac
  2

• Error while running the calc_AUC_per_neighbourhood() function

  #26 opened a year ago by aditisk
  36

• Augur dependency

  #21 opened 2 years ago by emdann
  3

• Interoperability with Seurat and comparison with traditional (clustered) DE analysis

  #29 opened 2 years ago by learning-MD
  19

• Runtime for p-value correction across neighbourhoods

  #27 opened 2 years ago by Biomiha
  3

• P-value correction error: wrong args for environment subassignment with parallel job failure

  #30 opened 2 years ago by RussBainer
  4

• using de_stat with wgcna in Vignette

  #28 opened 2 years ago by alwhiteh
  2

• Minor installation issues

  #22 opened 2 years ago by emdann
  1

• Rendering vignette to view from README

  #20 opened 2 years ago by emdann
  2

• Minor comments on the vignette

  #24 opened 2 years ago by emdann
  1

• Code review

  #19 opened 2 years ago by MikeDMorgan
  3

• Remove buildGraph step from assign_nhoods

  #3 opened 2 years ago by emdann
  3

• Write quick-start example for miloDE testing

  #2 opened 2 years ago by emdann
  1

• new task

  #1 opened 2 years ago by emdann
  0