Minor installation issues

[emdann]

Following the installation instructions I get the following error:

ERROR: dependency ‘miloR’ is not available for package ‘miloDE’
* removing ‘/home/jovyan/R/x86_64-pc-linux-gnu-library/4.1/miloDE’
Warning in i.p(...) :
  installation of package ‘/tmp/RtmpSTJSRs/file2995dabfe5a/miloDE_0.0.0.9000.tar.gz’ had non-zero exit status

But then if I install miloR first, I can install miloDE with no errors

BiocManager::install('miloR')
devtools::install_github("MarioniLab/miloDE")

Not sure if there's a fix, or if it's a problem with my env, but I'm just noting this here.

session info

R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.3 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3

locale:
[1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
[3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
[5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8
[7] LC_PAPER=en_US.utf8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base

other attached packages:
[1] devtools_2.4.2 usethis_2.1.3

loaded via a namespace (and not attached):
[1] rstudioapi_0.13 knitr_1.36
[3] magrittr_2.0.1 pkgload_1.2.3
[5] R6_2.5.1 rlang_0.4.12
[7] fastmap_1.1.0 tools_4.1.2
[9] pkgbuild_1.2.0 xfun_0.28
[11] sessioninfo_1.2.1 cli_3.1.0
[13] withr_2.4.2 remotes_2.4.1
[15] htmltools_0.5.2 ellipsis_0.3.2
[17] rprojroot_2.0.2 yaml_2.2.1
[19] digest_0.6.28 lifecycle_1.0.1
[21] crayon_1.4.2 processx_3.5.2
[23] BiocManager_1.30.16 purrr_0.3.4
[25] callr_3.7.0 fs_1.5.0
[27] ps_1.6.0 curl_4.3.2
[29] testthat_3.1.0 memoise_2.0.0
[31] glue_1.5.0 cachem_1.0.6
[33] evaluate_0.14 rmarkdown_2.11
[35] compiler_4.1.2 desc_1.4.0
[37] prettyunits_1.1.1

[amissarova]

added to readme jic