fiberseq/fibertools-rs

Issues

• how to state the genome 6mA marks

  #58 opened a month ago by cell-c
  1

• Adding expression filters to fibertools

  #20 opened a year ago by mrvollger
  1

• Questions about ft extract and ft fire commands

  #54 opened a month ago by MariosEft97
  2

• "Illegal instruction" after updating to latest version of fibertools-rs

  #49 opened 2 months ago by ywang285
  6

• Question regarding BAM header in pipeline output

  #55 opened 3 months ago by alexpreynolds
  6

• add-nucleosomes --min-ml-score option set to small values results in no nuc, msp or fire calls

  #52 opened 4 months ago by MariosEft97
  2

• ft extract and pysam return different molecular/reference coordinates for the same read

  #53 opened 4 months ago by MariosEft97
  2

• Can't run predict-m6a on ONT data

  #51 opened 4 months ago by connorhorton
  1

• ft center not working on K.marxianus data

  #48 opened 6 months ago by shedou35
  1

• Bug: Assertion error in supplemental or secondary reads

  #31 opened 6 months ago by mrvollger
  3

• pyft: Missing FIRE precision scores for MSPs in pyft.Ranges() class

  #41 opened 6 months ago by aman62000
  2

• Add footprinting subcommand

  #36 opened 6 months ago by mrvollger
  0

• What is the license?

  #40 opened 7 months ago by jjv5
  1

• Panic during center

  #35 opened 7 months ago by ngamarra
  1

• error[E0599]: no function or associated item named `from_xgoost_dump` found for struct `GBDT` in the current scope

  #39 opened 8 months ago by YueYvetteHao
  1

• Addition of writing to pyft

  #33 opened 8 months ago by bmallo
  1

• FIRE on targeted seq data: fiber-locations-shuffled.bed.gz is created empty

  #37 opened 9 months ago by Strausyatina
  1

• py-ft fiber.cpg and ft extract --cpg producing different number of blocks

  #34 opened 9 months ago by StephanieBohaczuk
  8

• failed to run custom build command for `libz-sys v1.1.12`

  #30 opened 10 months ago by ywang285
  2

• documentation for fire peaks

  #32 opened 10 months ago by waltno
  2

• Nanopore support

  #29 opened a year ago by oushujun
  4

• Train Revio HiFi data using train-m6A-calling

  #27 opened a year ago by choudharis2
  2

• Prep kit/Sequencer model/flow cell requirements for 6mA basecalling

  #26 opened a year ago by ywang285
  3

• Unable to install py-ft, maturin failed

  #25 opened a year ago by MorganHamm
  1

• Does m6a prediction require fiber-seq preperation

  #24 opened a year ago by ASLeonard
  3

• Is single-strand data supported?

  #23 opened a year ago by sparktx-nathan-johnson
  1

• ft center formatting minor issue with -w

  #21 opened a year ago by ymao4926
  1

• ft center m6A methylation on non A sites

  #22 opened a year ago by rlegendre
  2

• Bug in coordinates from ft center

  #14 opened a year ago by rlegendre
  7

• ft predict-m6a "panicked at 'called `Option::unwrap()`"

  #11 opened a year ago by rsisaac
  1

• Feature needed:

  #9 opened 2 years ago by mrvollger
  1

• Failing to filter out MSP and Nucs when there are no reference positions

  #2 opened 2 years ago by mrvollger
  3

• add -m option to README.md help snippets

  #1 opened 2 years ago by MorganHamm
  0