alexpreynolds

Pug caregiver, curler, cyclist, gardener, beginning French scholar

Altius Institute for Biomedical SciencesSeattle, WA USA

Pinned Repositories

biostar-handbook-web
Online companion for the Biostar Handbook.
Language:HTML8 5 04
byte-store
Generate and explore upper triangular and square matrices of 1-byte values
Language:C2 4 92
convert2bed
Convert common binary and text genomic formats to BED
Language:C2 2 12
filter-regions
Filter genomic regions by score and proximity
Language:Python1 3 00
hglive
HiGlass-backed dynamic BED gallery browser
Language:JavaScript2 3 00
kmer-collapse
Collapse a set of redundant kmers to use IUPAC degenerate bases
Language:Python3 4 00
kmer-counter
Count kmers with a more efficient (faster) hash table
Language:C++24 3 115
sample
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
Language:C69 7 512
soda
Python-based UCSC genome browser snapshot-taker and gallery-maker
Language:JavaScript12 4 63
bedops
:microscope: BEDOPS: high-performance genomic feature operations
Language:C294 16 27359

alexpreynolds's Repositories

alexpreynolds/kmer-counter
Count kmers with a more efficient (faster) hash table
Language:C++24 3 115
alexpreynolds/soda
Python-based UCSC genome browser snapshot-taker and gallery-maker
Language:JavaScript12 4 63
alexpreynolds/higlass-tabix-datafetcher
Provide remote access to remotely-hosted tabix files to HiGlass client applications
Language:JavaScript2 2 0
alexpreynolds/filter-regions
Filter genomic regions by score and proximity
Language:Python1 3 00
alexpreynolds/alexpreynolds
3 0
alexpreynolds/bam-js
Parse BAM and BAM index files in javascript for node and the browser
Language:TypeScript
alexpreynolds/bed12-to-bam
Convert generic BED12 to BAM
Language:Python
alexpreynolds/dbscan
clustering data via DBSCAN
alexpreynolds/dhs-bed12-to-bam
Convert Index DHS BED12 representation to BAM
Language:Python2 0
alexpreynolds/epilogos
Methods for summarizing and visualizing multi-biosample functional genomic annotations
Language:Python1 0
alexpreynolds/fire-bed11-to-sam
Convert FIRE-linker-nucleosome data in BED11 to SAM
Language:Python
alexpreynolds/generic-filehandle
use a subset of the NodeJS promise-based file handle API to access both local and remote files
Language:TypeScript
alexpreynolds/hclust
Agglomerative hierarchical clustering in JavaScript
alexpreynolds/higlass
Fast, flexible and extensible genome browser.
Language:JavaScript1 0
alexpreynolds/higlass-bigbed-datafetcher
Provide remote access to remotely-hosted bigBed files to HiGlass client applications
Language:JavaScript
alexpreynolds/higlass-bigwig-datafetcher
alexpreynolds/higlass-pileup
Language:JavaScript2 0
alexpreynolds/higlass-pileup-test
Testing development and production build capability of higlass and higlass-pileup
alexpreynolds/higlass-sequence
Nucleotide sequence track for HiGlass
alexpreynolds/higlass-transcripts
Gene transcripts track for HiGlass
Language:JavaScript1 0
alexpreynolds/indexedfasta-js
Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
alexpreynolds/LLM101n
LLM101n: Let's build a Storyteller
alexpreynolds/pypush
Cross-platform iMessage POC
Language:Python1 0
alexpreynolds/react-awesome-popover
A smart popover component with animation support for ReactJS
Language:JavaScript1 0
alexpreynolds/react-higlass-test
Test bench for HiGlass-based React application
Language:JavaScript
alexpreynolds/react-scrollwheel-test
Testing scrollwheel events in a React environment
Language:JavaScript
alexpreynolds/slider
React Slider
alexpreynolds/tfbs-bed7-to-sam
Convert TFBS data in BED6+1 to SAM
Language:Python
alexpreynolds/url-proxy
Express.js URL proxy server
Language:JavaScript2 0
alexpreynolds/vis-utils