mrvollger
Postdoctoral fellow in the @StergachisLab, member of the T2T and HPRC, all things long-reads. Please make reports on GitHub and not by email.
University of WashingtonSeattle, WA
Pinned Repositories
fibertools-rs
Tools for fiberseq data written in rust.
FIRE
A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
NucFreq
Rhodonite
A workflow for modularly running various repeat masking programs
rustybam
bioinformatics toolkit in rust
SafFire
SDA
Segmental Duplication Assembler (SDA).
segDupPlots
SmkTemplate
A template repository for snakemake workflows.
StainedGlass
Make colorful identity heatmaps of genomic sequence
mrvollger's Repositories
mrvollger/StainedGlass
Make colorful identity heatmaps of genomic sequence
mrvollger/rustybam
bioinformatics toolkit in rust
mrvollger/SDA
Segmental Duplication Assembler (SDA).
mrvollger/SmkTemplate
A template repository for snakemake workflows.
mrvollger/NucFreq
mrvollger/SafFire
mrvollger/fibertools
mrvollger/k-mer-variant-phasing
mrvollger/fastCN-smk
mrvollger/asm-to-reference-alignment
mrvollger/mrvollger.github.io
mrvollger/mutyper_workflow
mrvollger/Rhodonite
A workflow for modularly running various repeat masking programs
mrvollger/sd-divergence-and-igc-figures
A repository with my R code for making figures showing SD divergence and inter-locus gene conversion
mrvollger/utilities
random useful scripts for my projects
mrvollger/levio-smk
mrvollger/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
mrvollger/burn
Burn - A Flexible and Comprehensive Deep Learning Framework in Rust
mrvollger/dotfiles
mrvollger/drama-llama
mrvollger/Fiber-m6A-figures-and-tables
mrvollger/fire-figures
mrvollger/gia
gia: Genomic Interval Arithmetic
mrvollger/leviosam2
Fast and accurate coordinate conversion between assemblies
mrvollger/ONT-FIRE-Figures
mrvollger/paf2chain
convert PAF format to CHAIN format
mrvollger/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
mrvollger/subread-to-ccs-smk
mrvollger/UWrc.github.io
The best research computing website in all the land.
mrvollger/whatshap
Read-based phasing of genomic variants, also called haplotype assembly