mrvollger

Postdoctoral fellow in the @StergachisLab, member of the T2T and HPRC, all things long-reads. Please make reports on GitHub and not by email.

University of WashingtonSeattle, WA

Pinned Repositories

fibertools-rs
Tools for fiberseq data written in rust.
Language:Rust43 2 395
FIRE
A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
Language:Python15 3 183
NucFreq
Language:Python35 3 67
Rhodonite
A workflow for modularly running various repeat masking programs
Language:Perl2 2 00
rustybam
bioinformatics toolkit in rust
Language:Rust82 3 142
SafFire
Language:JavaScript26 6 68
SDA
Segmental Duplication Assembler (SDA).
Language:Python44 4 196
segDupPlots
Language:R10 3 14
SmkTemplate
A template repository for snakemake workflows.
Language:Python35 2 01
StainedGlass
Make colorful identity heatmaps of genomic sequence
Language:HTML106 5 4210

mrvollger's Repositories

mrvollger/StainedGlass
Make colorful identity heatmaps of genomic sequence
Language:HTML106 5 4210
mrvollger/rustybam
bioinformatics toolkit in rust
Language:Rust82 3 142
mrvollger/SDA
Segmental Duplication Assembler (SDA).
Language:Python44 4 196
mrvollger/NucFreq
Language:Python35 3 67
mrvollger/SmkTemplate
A template repository for snakemake workflows.
Language:Python35 2 01
mrvollger/SafFire
Language:JavaScript26 6 68
mrvollger/fibertools
Language:Jupyter Notebook8 2 1
mrvollger/k-mer-variant-phasing
Language:Python4 2 0
mrvollger/fastCN-smk
Language:Python3 2 13
mrvollger/asm-to-reference-alignment
Language:R2 2 14
mrvollger/mrvollger.github.io
Language:TeX2 3 0
mrvollger/Rhodonite
A workflow for modularly running various repeat masking programs
Language:Perl2 2 00
mrvollger/sd-divergence-and-igc-figures
A repository with my R code for making figures showing SD divergence and inter-locus gene conversion
Language:R2 2 0
mrvollger/utilities
random useful scripts for my projects
Language:Python2 2 0
mrvollger/levio-smk
Language:Python1 1 0
mrvollger/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Language:Rust1 1 0
mrvollger/burn
Burn - A Flexible and Comprehensive Deep Learning Framework in Rust
Language:Rust0 0
mrvollger/dotfiles
Language:Shell1 0
mrvollger/drama-llama
Language:Rust1 0
mrvollger/DSA-phasing
Language:Python
mrvollger/Fiber-m6A-figures-and-tables
Language:Jupyter Notebook1 0
mrvollger/fire-figures
Language:R1 0
mrvollger/gia
gia: Genomic Interval Arithmetic
Language:Rust0 0
mrvollger/leviosam2
Fast and accurate coordinate conversion between assemblies
Language:C++0 0
mrvollger/ONT-FIRE-Figures
Language:R
mrvollger/paf2chain
convert PAF format to CHAIN format
Language:Rust0 0
mrvollger/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML0 0
mrvollger/subread-to-ccs-smk
Language:Python1 0
mrvollger/UWrc.github.io
The best research computing website in all the land.
mrvollger/whatshap
Read-based phasing of genomic variants, also called haplotype assembly
Language:Python0 0