Pinned Repositories
ABACBS2018
Conference notes
alexyfyf.github.io
ATAC-seq
ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
atac_nf
Nextflow pipeline for ATAC-seq
ATACseqQC
ATAC-seq Quality Control
Bcell_Ki67_ATAC_JEM
ATACseq analysis for JEM paper
progmarker
Finding prognostic marker
RRBS_nf
Nextflow pipeline for analyzing RRBS data from NuGen Ovation library
shiny_kegg
Shiny app for pathway enrichment using clusterProfiler package
alexyfyf's Repositories
alexyfyf/atac_nf
Nextflow pipeline for ATAC-seq
alexyfyf/RRBS_nf
Nextflow pipeline for analyzing RRBS data from NuGen Ovation library
alexyfyf/ABACBS2018
Conference notes
alexyfyf/alexyfyf.github.io
alexyfyf/ATAC-seq
ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories
alexyfyf/atac-seq-pipeline
ENCODE ATAC-seq pipeline
alexyfyf/Bcell_Ki67_ATAC_JEM
ATACseq analysis for JEM paper
alexyfyf/bioinformatics_seminar
alexyfyf/progmarker
Finding prognostic marker
alexyfyf/shiny_kegg
Shiny app for pathway enrichment using clusterProfiler package
alexyfyf/CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
alexyfyf/ChIP_nf
Nextflow pipeline for ChIP-seq data analysis
alexyfyf/ChIPseeker
:dart:ChIP peak Annotation, Comparison and Visualization
alexyfyf/DOSE
:mask: Disease Ontology Semantic and Enrichment analysis
alexyfyf/epihet
EpiHet
alexyfyf/IsoLamp
Identification of known and novel isoforms from targeted amplicon long-read sequencing
alexyfyf/localWorkshop
Workshop Slides and Website for Cross-validated Classification Workshop Held on 29 June 2018 in Sydney
alexyfyf/methclone
Automatically exported from code.google.com/p/methclone
alexyfyf/methyl_util
Useful scripts and functions for methylation analysis
alexyfyf/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
alexyfyf/MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
alexyfyf/netlify-hugo-academic
alexyfyf/plyranges
A grammar of genomic data transformation
alexyfyf/RNA-seq-variant-calling
Functions to call variant in RNA-Seq with Mutect2, Varscan, and Vardict
alexyfyf/RNAsik-pipe
RNAsik - more than just a pipeline
alexyfyf/SalmonTools
Useful tools for working with Salmon output
alexyfyf/starter-hugo-academic
🎓 Hugo Academic Theme 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
alexyfyf/TCGAworkflow
useful scripts for TCGA data analysis
alexyfyf/utils
utility functions for *-seq data analysis
alexyfyf/wf-transcriptomes