alexyfyf

alexyfyf's Stars

• Teichlab/scg_lib_structs

  Collections of library structure and sequence of popular single cell genomic methods

  Language:HTML39786

• nickp60/fcid

  Language:Python9

• smithlabcode/dnmtools

  Tools for analyzing DNA methylation data

  Language:C++237

• therabidsquirel/The-Fallout-Shelter-FAQ

  16815

• alexyfyf/atac_nf

  Nextflow pipeline for ATAC-seq

  Language:Nextflow6

• crazyhottommy/ChIP-seq-analysis

  ChIP-seq analysis notes from Ming Tang

  Language:Python712292

• GoekeLab/awesome-nanopore

  A curated list of awesome nanopore analysis tools.

  21942

• jemunro/wehi-nextflow-training

  An introduction to developing and running Nextflow workflows at WEHI

  Language:Nextflow52

• timkahlke/LongRead_tutorials

  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

  11827

• GoekeLab/sg-nex-data

  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

  Language:Jupyter Notebook9423

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  685158

• openmlsys/openmlsys-zh

  《Machine Learning Systems: Design and Implementation》- Chinese Version

  Language:TeX3.8k419

• Anduin2017/HowToCook

  程序员在家做饭方法指南。Programmer's guide about how to cook at home (Simplified Chinese only).

  Language:Dockerfile63k8.5k

• snystrom/vplot

  A commandline tool for generating vplot matrices from paired end sequencing data such as MNase-seq, ATAC-seq, or CUT&RUN.

  Language:Rust21

• adamewing/te-nanopore-tools

  tools for plotting and parsing methylation aimed at TEs

  Language:Python71

• ying-w/bioinformatics-figures

  Collection of scripts and examples to visualize bioinformatics data

  Language:HTML104

• Henikoff/Cut-and-Run

  Language:Python2917

• nanoporetech/pipeline-transcriptome-de

  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

  Language:Python10625

• SiwenX/RegSNPs-ASB

  RegSNPs-ASB

  Language:R21

• alexyfyf/RRBS_nf

  Nextflow pipeline for analyzing RRBS data from NuGen Ovation library

  Language:Python23

• arvkevi/kneed

  Knee point detection in Python :chart_with_upwards_trend:

  Language:Python71074

• clauswilke/dataviz

  A book covering the fundamentals of data visualization

  Language:HTML3.1k688

• goldenhelix/cftr-variant-classification-analysis

  Files for the analysis of different variant classification tools using an artifically created set of variants in the CFTR gene

  76

• jasteen/nextflow-workflows

  Language:Nextflow51

• igordot/genomics

  A collection of scripts and notes related to genomics and bioinformatics

  Language:R19254

• bioFAM/MOFA

  Multi-Omics Factor Analysis

  Language:R22855

• 10XGenomics/supernova

  10x Genomics Linked-Read Diploid De Novo Assembler

  Language:C++6226

• nanopore-wgs-consortium/NA12878

  Data and analysis for NA12878 genome on nanopore

  Language:Python37293

• holtgrewe/ngs_pipelines

  Nextflow-based pipelines for typical NGS processing tasks

  Language:Groovy64

• CRG-CNAG/CalliNGS-NF

  GATK RNA-Seq Variant Calling in Nextflow

  Language:Nextflow13052