mikessh/mageri

Issues

• I would like to ask about the problem of outofmemory

  #40 opened 3 years ago by Liripo
  1

• How to modify header in order to use M4 option?

  #31 opened 8 years ago by rmtsoa
  3

• Problems on detect umi on library

  #39 opened 5 years ago by bioinfo-dirty-jobs
  0

• Minimum number of UMI reads question

  #38 opened 6 years ago by dfajar2
  0

• Building Index Hung?

  #37 opened 6 years ago by ccario83
  5

• How to remove cap on Q score

  #36 opened 6 years ago by xuchang116
  3

• Variant calling error

  #35 opened 7 years ago by davidcoffey
  4

• master_adapter and slave_adapter

  #34 opened 6 years ago by Lien-NGSdummie
  1

• Java Out of Memory Error

  #33 opened 6 years ago by Khillo81
  1

• Error while running with UMI

  #32 opened 7 years ago by VNagesh-Bio
  6

• Allow Indel output

  #24 opened 9 years ago by mikessh
  1

• Optimize indel-heavy consensus assembly

  #25 opened 8 years ago by mikessh
  2

• Add more parameters to config

  #26 opened 8 years ago by mikessh
  0

• Mageri for Exome capture dataset

  #30 opened 8 years ago by apastore
  0

• Add to docs

  #28 opened 9 years ago by mikessh
  0

• Cap MAPQ at 255

  #29 opened 9 years ago by mikessh
  0

• Advanced UMI tag set handling

  #23 opened 9 years ago by mikessh
  1

• Switch to new version of milib

  #10 opened 9 years ago by mikessh
  1

• Fix extraction percent in primer mode

  #27 opened 9 years ago by mikessh
  0

• VCF file header problem

  #22 opened 9 years ago by mikessh
  0

• Empty checkout output

  #21 opened 9 years ago by mikessh
  0

• Add CQS score values to output

  #20 opened 9 years ago by mikessh
  0

• Input processing flexibility

  #18 opened 9 years ago by mikessh
  0

• Restore tests

  #9 opened 9 years ago by mikessh
  0

• Lower memory usage

  #15 opened 9 years ago by mikessh
  0

• Report chimeric stats

  #16 opened 9 years ago by mikessh
  0

• Barcode search problems

  #19 opened 9 years ago by mikessh
  0

• Invalid sam output

  #17 opened 9 years ago by mikessh
  0

• Serialization

  #14 opened 9 years ago by mikessh
  0

• Refactoring/check for MIGEC parameter set

  #7 opened 9 years ago by mikessh
  0

• More flexible de-multiplexing

  #11 opened 9 years ago by mikessh
  0

• Check 1-based/0-based coordinates

  #12 opened 9 years ago by mikessh
  0

• Implement classifier loading

  #13 opened 9 years ago by mikessh
  0

• Consensus assembly problem

  #6 opened 9 years ago by mikessh
  0

• Re-implementation of haplotype assembly

  #8 opened 10 years ago by mikessh
  0

• Classifier benchmark

  #5 opened 10 years ago by mikessh
  0

• Implement new algorithm for hot-spot error filtering

  #2 opened 10 years ago by mikessh
  0

• Implement classifier training

  #4 opened 10 years ago by mikessh
  0

• Implement dumping for minor variants

  #3 opened 10 years ago by mikessh
  0

• Overlap bug

  #1 opened 10 years ago by mikessh
  0