Pinned Repositories
vdjdb-db
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
igblast-bin
IgBlast v1.4.0 binaries dump for homebrew, etc. Please refer to official web page
jsres
Java implementation of Stochastic Ranking Evolutionary Strategy optimization algorithm.
mageri
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
migec
A RepSeq processing swiss-knife
migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
oncofuse
Predicting oncogenic potential of gene fusions
repseq-tutorial
Rep-Seq data analysis tutorial
vdjtools
Post-analysis of immune repertoire sequencing data
vdjtools-examples
A set of real-world RepSeq datasets used for testing the VDJtools software
mikessh's Repositories
mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
mikessh/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
mikessh/migec
A RepSeq processing swiss-knife
mikessh/mageri
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
mikessh/oncofuse
Predicting oncogenic potential of gene fusions
mikessh/repseq-tutorial
Rep-Seq data analysis tutorial
mikessh/vdjtools-examples
A set of real-world RepSeq datasets used for testing the VDJtools software
mikessh/igblast-bin
IgBlast v1.4.0 binaries dump for homebrew, etc. Please refer to official web page
mikessh/jsres
Java implementation of Stochastic Ranking Evolutionary Strategy optimization algorithm.
mikessh/mageri-paper
Data and post-analysis for MAGERI project
mikessh/aging-study
Metadata and some analysis for the T-cell repertoire aging study
mikessh/duplicates
Analysis of duplicate reads in Illumina sequencing
mikessh/exome-misc
Miscellaneous tools for exome-seq: annotating SNP, counting molecules on start, etc
mikessh/mixcr
MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.
mikessh/polyfid
Polymerase fidelity estimates
mikessh/repseq-snippets
mikessh/vdjtools-doc
THIS REPOSITORY IS DEPRECATED, FOR ISSUE TRACKER GO TO
mikessh/cdrnbs-spark-sandbox
mikessh/homebrew-repseq
Immune repertoire sequencing data analysis packages for Linux/MacOS.
mikessh/juncstat
Some statistics over RNA-seq aligner junctions files
mikessh/seqcliutil
Some basic utils for operating FASTA files
mikessh/vdj-standard
Tool suite for parsing V(D)J alignment results and produce AIRR standard format