mikessh/migec

Issues

• ERROR: Bad barcode .. Terminating

  #57 opened 4 years ago by emmecola
  1

• the output files of Histogram

  #55 opened 5 years ago by Andelyu
  1

• How to make an old MIGEC v1.2.9 package works under the new version of Java 17

  #65 opened 2 years ago by sean1sun
  0

• Documentation of the max-offset setting is unclear

  #63 opened 2 years ago by gustavjoh
  1

• High number of master undef sequences

  #62 opened 2 years ago by ashwinkallor
  0

• Checkout not compressing correctly

  #50 opened 5 years ago by scharch
  3

• Unique Master-Slave barcode combinations possible?

  #22 opened 7 years ago by FelixKrueger
  10

• Use migec with bulk MiSeq data

  #61 opened 3 years ago by Kaj-cyber
  0

• Oversequencing threshold for samples in a same run

  #60 opened 3 years ago by fabio-t
  0

• Incorrect index and read parsing during demultiplexing

  #59 opened 3 years ago by blackbeerd
  2

• TRA on mouse Qiagen TcR data

  #58 opened 3 years ago by splaisan
  0

• "FileNotFoundException: _migec_error.log (Too many open files)"

  #56 opened 5 years ago by cohenp05
  0

• How to deal with redundancy among master barcodes?

  #54 opened 5 years ago by VicenteFR
  1

• Error running VDJ junction mapping: [Message] Division undefined

  #53 opened 5 years ago by VicenteFR
  0

• Assemble options don't take arguments.

  #52 opened 5 years ago by watronfire
  0

• Checkout Throwing Input/Output Error

  #51 opened 5 years ago by peter-yufan-zeng
  0

• Different size of UMI region.

  #28 opened 7 years ago by josh4ever
  1

• Can I use MIGEC if my UMI is on 3'?

  #47 opened 5 years ago by suntaosimon
  1

• Why seed and fuzzy-search in MIGEC?

  #49 opened 5 years ago by chengyangit
  0

• Is is possible to read barcode sequences that are embedded in the header (line one of fastq file) instead of the read sequence? And if so to restrict the search to the header lines?

  #48 opened 5 years ago by larrystern
  0

• Bypassing Checkout and custom read overlap : details needed

  #46 opened 5 years ago by cgirardot
  7

• database problem: missing gene

  #44 opened 5 years ago by GildasLepennetier
  1

• Spaces in segments file cause CdrBlast crash

  #41 opened 5 years ago by fabio-t
  0

• Non UMI Sequencing

  #40 opened 6 years ago by tiagobrc
  1

• Histogram interpretation

  #43 opened 6 years ago by sureman
  0

• Version check in migec script fails with openjdk 10

  #42 opened 6 years ago by fabio-t
  1

• Should I use trimming tool before using migec?

  #38 opened 6 years ago by gorgitko
  5

• How to determine the exact barcode sequence

  #39 opened 6 years ago by jessicaluckygirl
  3

• losing MIGs during AssembleBatch

  #36 opened 6 years ago by jsabatino37
  2

• Add reference to Nat Prot

  #31 opened 6 years ago by mikessh
  0

• Wanting to extract 400nt long reads after demuxing using checkout but not sure what is happening to the sequences

  #25 opened 7 years ago by DanBolland
  2

• Fix collision filter option

  #20 opened 6 years ago by mikessh
  0

• Export quality dropped sequences in CdrBlast

  #19 opened 6 years ago by mikessh
  0

• No assemble.log.txt

  #29 opened 6 years ago by gknit
  1

• how to cdrblast output results without non-functional CDR3s?

  #35 opened 6 years ago by suntaosimon
  1

• Migec_1.2.7 and Migec_1.2.8

  #37 opened 6 years ago by ADvorkinGheva
  1

• UMI collisions when number of original molecules is very high

  #34 opened 6 years ago by fabio-t
  0

• MiXCR or CdrBlast?

  #33 opened 6 years ago by fabio-t
  8

• Add option to search barcodes only in limited range from sequence start

  #32 opened 6 years ago by mikessh
  0

• Error during MIGEC CDR BLAST

  #30 opened 6 years ago by RaviDandekar
  2

• java.lang.ArrayIndexOutOfBoundsException: 1 on CdrBlastBatch

  #27 opened 7 years ago by jeremycfd
  1

• raw result from the nature paper?

  #26 opened 7 years ago by swuecho
  0

• working with de-multiplexed sequence?

  #23 opened 7 years ago by swuecho
  6

• MusMusculus TRA supported?

  #24 opened 7 years ago by stevedaley
  2

• Better explanation of Assemble log file

  #18 opened 8 years ago by mikessh
  0

• Check references

  #16 opened 8 years ago by mikessh
  1

• Distinguish multiple chains in mixture sample

  #13 opened 9 years ago by mikessh
  0

• No CdrBlast matches even though manual BLAST works

  #15 opened 9 years ago by wlchew
  4

• [ERROR] no UMI header in input.

  #14 opened 9 years ago by smha118
  1

• help running migec-1.2.1a

  #12 opened 9 years ago by djoconnell
  2