antibody

There are 85 repositories under antibody topic.

  • getantibody/antibody

    The fastest shell plugin manager.

    Language:Go1.7k1717962

  • milaboratory/mixcr

    MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

    Language:Kotlin3353198279
  • awesome-vdj

    slowkow/awesome-vdj

    📚 Tools and databases for analyzing HLA and VDJ genes.

    21015225

  • Merck/BioPhi

    BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.

    Language:Python152105645

  • mikessh/vdjtools

    Post-analysis of immune repertoire sequencing data

    Language:Groovy13122040

  • oxpig/AntiFold

    Improved antibody structure-based design using inverse folding

    Language:Python7531011

  • mikessh/migmap

    HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

    Language:Groovy5210020

  • Genentech/walk-jump

    Official repository for discrete Walk-Jump Sampling (dWJS)

    Language:Python49618

  • Merck/Sapiens

    Sapiens is a human antibody language model based on BERT.

    Language:Jupyter Notebook4910117

  • prescient-design/walk-jump

    Official repository for discrete Walk-Jump Sampling (dWJS)

    Language:JavaScript45645

  • immunomind/covid19

    🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

    441013

  • mikessh/migec

    A RepSeq processing swiss-knife

    Language:Groovy4112019

  • xinyu-dev/annotate_v

    Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

    Language:Jupyter Notebook28124

  • bobsoppe/zsh-ssh-agent

    Ssh-agent management for zsh

    Language:Shell25306

  • gf712/AbPyTools

    Python package for analysis of antibody heavy and light chains

    Language:Python24233

  • frankroeder/dotfiles

    $HOME of my ~/.dotfiles (macOS & Linux)

    Language:Shell22007
  • stitch

    snijderlab/stitch

    Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

    Language:C#2212503

  • mit-ll/AlphaSeq_Antibody_Dataset

    Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide

    21722

  • haddocking/HADDOCK-antibody-antigen

    Material to run the HADDOCK antibody-antigen modelling protocol

    Language:Python20679

  • kevinmicha/ANTIPASTI

    ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.

    Language:Jupyter Notebook20423

  • BEAM-Labs/BALM

    Inference code for Bio-Inspired Antibody Language Model

    Language:Python19153

  • alchemab/parapred-pytorch

    PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)

    Language:Python18621
  • dotfiles-dotbot

    0-vortex/dotfiles-dotbot

    A utility first dev tooling repo with dotbot, zsh, antibody, defaults, pkgsrc, plist, fonts, git-extras, git-quick-stats, atom, pip, npm, cargo, go, karabiner, carpalx full optimization.

    Language:Shell152114

  • bushidocodes/dotfiles

    Dotbot managed dotfiles for a polyglot dev using WSL. Includes PowerShell stuff for Windows Installation

    Language:Shell15201

  • brandonsie/epitopefindr

    R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.

    Language:R14208

  • cognano/AVIDa-hIL6

    Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions"

    Language:Jupyter Notebook13101

  • colbyford/SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions

    AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions

    Language:Jupyter Notebook12304

  • yjcyxky/antibody-dl

    A Collection of Platform, Tools, and Resources for Antibody Engineering

    Language:Python12203

  • TobiasHeOl/kasearch

    KA-Search: Rapid and exhaustive sequence identity search of known antibodies

    Language:Jupyter Notebook11249

  • AstraZeneca/SelfPAD

    The official implementation of "Improving Antibody Humanness Prediction using Patent Data".

    Language:Python9414

  • cognano/AVIDa-SARS-CoV-2

    Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"

    Language:Python9200

  • Terkild/CITE-seq_optimization

    Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

    Language:R9202

  • adhamu/dotfiles

    For macOS & Linux

    Language:Shell8401

  • krdav/SPURF

    Substitution Profiles Using Related Families

    Language:Python8201
  • PD-1_Fab_Diffusion

    tuplexyz/PD-1_Fab_Diffusion

    PD-1 Targeted Antibody Discovery Using AI Protein Diffusion

    Language:Shell8101

  • markosamuli/dotfiles

    My ~/.dotfiles

    Language:Shell7311