antibody
There are 82 repositories under antibody topic.
getantibody/antibody
The fastest shell plugin manager.
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
slowkow/awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
Merck/BioPhi
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
mikessh/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Genentech/walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
immunomind/covid19
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
Merck/Sapiens
Sapiens is a human antibody language model based on BERT.
mikessh/migec
A RepSeq processing swiss-knife
oxpig/AntiFold
Improved antibody structure-based design using inverse folding
prescient-design/walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
xinyu-dev/annotate_v
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
bobsoppe/zsh-ssh-agent
Ssh-agent management for zsh
gf712/AbPyTools
Python package for analysis of antibody heavy and light chains
haddocking/HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol
snijderlab/stitch
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
alchemab/parapred-pytorch
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
BEAM-Labs/BALM
Inference code for BALM
frankroeder/dotfiles
$HOME of my ~/.dotfiles (macOS & Linux)
mit-ll/AlphaSeq_Antibody_Dataset
Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide
0-vortex/dotfiles
A utility first dev tooling repo with dotbot, zsh, antibody, defaults, pkgsrc, plist, fonts, git-extras, git-quick-stats, atom, pip, npm, cargo, go, karabiner, carpalx full optimization.
bushidocodes/dotfiles
Dotbot managed dotfiles for a polyglot dev using WSL. Includes PowerShell stuff for Windows Installation
brandonsie/epitopefindr
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
colbyford/SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
kevinmicha/ANTIPASTI
ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.
cognano/AVIDa-hIL6
Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions"
Terkild/CITE-seq_optimization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
TobiasHeOl/kasearch
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
adhamu/dotfiles
For macOS & Linux
krdav/SPURF
Substitution Profiles Using Related Families
yjcyxky/antibody-dl
A Collection of Platform, Tools, and Resources for Antibody Engineering
markosamuli/dotfiles
My ~/.dotfiles
arsham/dotfiles
My dotfiles for zsh, tmux, etc.
jrwrigh/dotfiles2.0
My (new) dotfiles repository