snijderlab/stitch

Issues

• Local confidence invalid

  #244 opened a year ago by Ln9052
  3

• Index out of range

  #243 opened a year ago by MengTingHe2023
  3

• How could I use stitch to analyze my antibody sequence produced by PEAKS ?

  #239 opened a year ago by huyoyo2001
  13

• Unrecognized Casanovo result.mztab file line start code

  #242 opened a year ago by Ln9052
  16

• Support MaxQuant database search input data

  #238 opened a year ago by douweschulte
  5

• Folder search

  #240 opened a year ago by MengTingHe2023
  4

• error in basic search

  #241 opened a year ago by pikiton
  3

• Rebuilding CDR3 is still very hard

  #231 opened 2 years ago by douweschulte
  2

• Use proteases specificity

  #237 opened a year ago by douweschulte
  0

• Highlight common errors in consensus alignment

  #236 opened a year ago by douweschulte
  0

• Merge reads based on precursor mass

  #235 opened a year ago by douweschulte
  0

• Force germline on low DOC

  #234 opened a year ago by douweschulte
  0

• Add fastQ export option

  #233 opened a year ago by douweschulte
  0

• How to create templates for a new species

  #232 opened a year ago by biocc
  1

• Annotate zero confidence positions in structural reads

  #211 opened 2 years ago by douweschulte
  1

• Sequence annotation is broken on gap in cdr

  #194 opened 2 years ago by douweschulte
  2

• Implement spectrum loading for other input types

  #195 opened 2 years ago by douweschulte
  3

• Read align comic / bars view does not work in print

  #230 opened 2 years ago by douweschulte
  0

• Small HTML problems

  #223 opened 2 years ago by douweschulte
  1

• Hashes with any used file in batchfile

  #229 opened 2 years ago by douweschulte
  1

• Implement batchfile extension with other documents

  #209 opened 2 years ago by douweschulte
  1

• Score identities in CDRs higher

  #226 opened 2 years ago by douweschulte
  0

• Linking bug in reads details

  #227 opened 2 years ago by douweschulte
  0

• Incorrect linking of Peaks ions tables

  #228 opened 2 years ago by douweschulte
  0

• CLI improvements

  #225 opened 2 years ago by douweschulte
  0

• Github actions improvements

  #224 opened 2 years ago by douweschulte
  0

• Xle disambiguation FDR

  #218 opened 2 years ago by douweschulte
  0

• Handling of long reads

  #215 opened 2 years ago by douweschulte
  2

• Output incorrectly placed

  #221 opened 2 years ago by douweschulte
  0

• Incorrect FileRanges with Alphabets sets

  #222 opened 2 years ago by douweschulte
  0

• Mass alignment handle patches in consensus

  #220 opened 2 years ago by douweschulte
  0

• Update MS specific terms in the HTML

  #214 opened 2 years ago by douweschulte
  1

• Use average local confidence of structural read for filtering

  #217 opened 2 years ago by douweschulte
  1

• Generalise tree handling

  #213 opened 2 years ago by douweschulte
  0

• Remove header with polyclonal runs

  #212 opened 2 years ago by douweschulte
  0

• Separate Peaks/raw data refine procedure

  #219 opened 2 years ago by douweschulte
  1

• Allow for termini based modifications

  #210 opened 2 years ago by douweschulte
  0

• Template Refine

  #208 opened 2 years ago by douweschulte
  0

• Switch for Xle disambiguation

  #216 opened 2 years ago by douweschulte
  0

• Support mmCIF files for sequence loading

  #207 opened 2 years ago by douweschulte
  1

• Do something with common massspec errors

  #197 opened 2 years ago by douweschulte
  6

• Select an ambiguous position in the consensus overview

  #199 opened 2 years ago by douweschulte
  0

• Add CDR column in csv export

  #200 opened 2 years ago by douweschulte
  0

• Use Nonselected Templates as Decoy

  #206 opened 2 years ago by kostrouc
  1

• Reformatting Datasets CSV

  #205 opened 2 years ago by kostrouc
  6

• Specifying Non-local Output Dir

  #204 opened 2 years ago by kostrouc
  2

• Getting Started Script for Windows Unsuccessful

  #202 opened 2 years ago by kostrouc
  2

• Building in Windows cmd

  #203 opened 2 years ago by kostrouc
  2

• Spectrum viewer have a way to show raw values

  #198 opened 2 years ago by douweschulte
  3

• Refactor readsalignment

  #196 opened 2 years ago by douweschulte
  1