Pinned Repositories
Chatham
Converts images to triangle representation via a hill climbing algorithm.
COVID-19-Testing-Results
Collecting COVID-19 testing data from around the world
CViSB_Workshop_TCells
Tutorial on T cell identification and characterization using single cell RNA-seq data for CViSB's 2020 Workshop.
Denver
NeuroEvolution of Augmenting Typologies (NEAT) Implementation in Java
Vercingetorix
T cell receptor repertoire analysis.
watronfire's Repositories
watronfire/Vercingetorix
T cell receptor repertoire analysis.
watronfire/COVID-19-Testing-Results
Collecting COVID-19 testing data from around the world
watronfire/CViSB_Workshop_TCells
Tutorial on T cell identification and characterization using single cell RNA-seq data for CViSB's 2020 Workshop.
watronfire/beast-beagle-docker
watronfire/Alignment-Repo
Repo maintaining a number of pathogen alignments
watronfire/augur
Pipeline components for real-time phylodynamic analysis
watronfire/baltic
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
watronfire/baltic-examples
Examples of using the Baltic plotting library
watronfire/bioconda-recipes
Conda recipes for the bioconda channel.
watronfire/Eureka
Snakemake pipeline for analysis of pathogen genomes. Will be pathogen-agnostic in the future but is currently designed for *Vibrio Cholerae*
watronfire/FAVITES
FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
watronfire/geosketch
watronfire/HCoV-19-Genomics
SARS-CoV-2 genomics
watronfire/Hoonah
watronfire/iVar
Confirms intrahost variants with sequencing replicates.
watronfire/Maximilian
Mosquito metatranscriptomics monitoring pipeline.
watronfire/monterey
watronfire/Pismo
watronfire/PrimalSeq_Pipeline
Snakemake pipeline for processing sequencing reads generated with the PrimalSeq v4 protocol.
watronfire/PrimalSeq_Simulator
A read simulator for the PrimalSeq protocol.
watronfire/project_2023_WNV_transmission
watronfire/Public-CV
LaTeX template for my CV
watronfire/public_health_bioinformatics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
watronfire/sarscov2-adaptive-evolution
watronfire/snakemake-broad-uger
Snakemake profile to execute workflows on the Broad Institute UGER cluster
watronfire/Taos
De novo development of poker strategy.
watronfire/Tialoc
watronfire/ubba
Tools for processing of single cell data and benchmarking of batch correction techniques
watronfire/WARN-ID_training
Scripts to setup laptops for ACEGID training.
watronfire/watronfire.github.io