Pinned Repositories
airr-standards
AIRR Community Data Standards
aligator
A pipeline for annotating genomic contigs from the Ig loci
BALDR
Tweaks of BosingerLab pipeline
DnaGrep
filterBALDR
A short script to filter contigs output by BALDR
partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
pips
Modified scripts from Luo et al 2016 for calling variant IG alleles from short read data
pseudogenes
scLVM
scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.
SONAR
Software for Ontogenic aNalysis of Antibody Repertoires
scharch's Repositories
scharch/SONAR
Software for Ontogenic aNalysis of Antibody Repertoires
scharch/airr-standards
AIRR Community Data Standards
scharch/aligator
A pipeline for annotating genomic contigs from the Ig loci
scharch/BALDR
Tweaks of BosingerLab pipeline
scharch/DnaGrep
scharch/filterBALDR
A short script to filter contigs output by BALDR
scharch/partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
scharch/pips
Modified scripts from Luo et al 2016 for calling variant IG alleles from short read data
scharch/pseudogenes
scharch/scLVM
scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.