Migec_1.2.7 and Migec_1.2.8

[ADvorkinGheva]

Hello,

I have demultiplexed paired-end fastq files (they were dumultiplexed at our sequencing facility). The barcodes were clipped from the sequences.

When trying to run migec (both 1.2.7 and 1.2.8), I get errors (please, see the attached log files).
I would greatly appreciate any advice on how to solve these.

Thank you very much!

Sincerely,
Anna
_migec_error_2.1.7.log
_migec_error_2.1.8.log

[mikessh]

Hello.

It looks like your checkout.filelist.txt is malformed and you're specifying the same path for checkout/ folder and histogram output folder. You can try re-running all routines using separate folder for each analysis step, e.g. naming them exactly as in docs.