Pinned Repositories
InSilico_PCR
extract long read subsequences from a pair of primers
comparing_NGS-mappers
code for a white paper on our WIki
NGS-RNAseq-training
Hands-On training 2015
ngs-tools
Scripts to help analysis of NGS data
NGS-Variant-Analysis-and-coverage-depth
Subsample a large Drosophila dataset to measure the effect of coverage depth on variant calls
NGS-Variant-Analysis-training-2016
Adapted session for a one-day training
splaisan
Home Swiss-home
Summer_school_2018
Exchange platform for sharing issues and advice during the training
venn-tools
R scripts to plot Venn diagrams for 2,3,4-way Venn from counts
splaisan's Repositories
splaisan/NGS-Variant-Analysis-and-coverage-depth
Subsample a large Drosophila dataset to measure the effect of coverage depth on variant calls
splaisan/venn-tools
R scripts to plot Venn diagrams for 2,3,4-way Venn from counts
splaisan/ngs-tools
Scripts to help analysis of NGS data
splaisan/comparing_NGS-mappers
code for a white paper on our WIki
splaisan/NGS-Variant-Analysis-training-2016
Adapted session for a one-day training
splaisan/qiime-tools
scripts and methods to use Qiime2 on long-reads
splaisan/Summer_school_2018
Exchange platform for sharing issues and advice during the training
splaisan/analyses
data mining & explorations
splaisan/splaisan
Home Swiss-home
splaisan/another_git
splaisan/BionanoThinkmate-NC
splaisan/DevNet
The DevNet project on github stores the PacBio DevNet website.
splaisan/flo
Same species annotation lift over pipeline.
splaisan/fork-repository
This repository is made for teaching purposes.
splaisan/GenomicConsensus
PacBio® variant and consensus caller
splaisan/github-slideshow
A robot powered training repository :robot:
splaisan/hello-github-actions
splaisan/lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
splaisan/markdown-cheatsheet
Markdown Cheatsheet for Github Readme.md
splaisan/mockcommunity
Long-read mock community experiments
splaisan/my-project
splaisan/NGS-Variant-Analysis-training-2020
Adapted training for GATK 4.1.4.x
splaisan/phased_primers_shiny
Shiny app to create phased PCR 1 primers for amplicon library preparation.
splaisan/plotting-tools
code to plot from numbers
splaisan/Protocols
Repository for Public Protocols
splaisan/q2-feature-classifier
QIIME 2 plugin supporting taxonomic classification
splaisan/read2tree
a tool for inferring species tree from sequencing reads
splaisan/text-tools
Parsing and filtering delimited text data
splaisan/TIDDIT
TIDDIT - structural variant calling
splaisan/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly