deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
C++MIT
Issues
- 1
- 11
Install error
#42 opened by anabbi - 11
- 0
Got different allele result for different IMGT version
#41 opened by lidd77 - 0
- 0
Reason for setting bias value for annoHLA.pl
#39 opened by lidd77 - 7
- 1
how to assign read to gene ?
#37 opened by lidd77 - 5
- 1
- 7
Feature request
#26 opened by Redmar-van-den-Berg - 1
- 6
Couldn't run a test on example files of exon. I saw this error related to libtinfo.so.5: version `NCURSES_TINFO_5.0.19991023'
#32 opened by jayminz - 7
Typing long reads
#33 opened by oumodavid1625 - 15
DRB3 and DRB5
#14 opened by bsb2014 - 5
ExtractHLAread.sh
#19 opened by vegetableyu - 15
- 10
Low confidence result for all HLA genes
#27 opened by Carovanandel - 2
- 6
Identify somatic HLA mutation from SpecHLA
#23 opened by LongpanUPC - 2
- 3
MICA and MICB
#22 opened by SQ-Gao - 4
ExtractHLAread.sh syntax errors.
#20 opened by Kelly-ST-HRI - 3
HLA typing with long-read data
#17 opened by vegetableyu - 1
- 1
Null results for certain HLA loci
#10 opened by Jwong684 - 9
full-length or exon typing
#16 opened by bsb2014 - 2
Diploid asm
#5 opened by bsb2014 - 4
Novel alleles
#15 opened by bsb2014 - 1
Install probelm
#13 opened by bsb2014 - 5
Errors when running SpecHLA.sh
#12 opened by bsb2014 - 1
BWA or bowtie2
#11 opened by bsb2014 - 3
- 2
Question about ploidy for LOH
#9 opened by Jwong684 - 3
multithreading does not work
#8 opened by Cimorgh-IT - 1
- 3
Publication for SpecHLA
#3 opened by NTNguyen13 - 11
no result for SpecHLA_single
#1 opened by hmyh1202 - 1
- 1
[help] simulate TGS
#2 opened by hmyh1202