local-assembly

There are 3 repositories under local-assembly topic.

  • nygenome/lancet

    Microassembly based somatic variant caller for NGS data

    Language:C153145733

  • brentp/indelope

    find large indels (in the blind spot between GATK/freebayes and SV callers)

    Language:Nim39961

  • deepomicslab/SpecHLA

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

    Language:C++283389