pacbio-data
There are 31 repositories under pacbio-data topic.
tjiangHIT/cuteSV
Long read based human genomic structural variation detection with cuteSV
bcgsc/arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
PacificBiosciences/HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
yjx1217/LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
tjiangHIT/rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
hitbc/rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
niaid/UMI-pacbio-pipeline
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
xapple/pacmill
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
comery/HIFI-barcode-pacbio
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
conchoecia/hormiphora
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
KatjaKo/PacBio_AMF
A workflow for processing CCS reads of AMF to ASVs using DADA2
AukeHaver/salmonella_methylation_pipeline
SMP: A Salmonella Methylation analysis Pipeline
codecreatede/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
codecreatede/go-mapper-diamond
pacbio read alignment, estimating tags and coverage from protein to read mapping
codecreatede/go-pacbiohifi
profiling pacbiokmers and filtering pacbio kmers
fcunial/Revant
De novo repeat inference from long reads
codecreatede/go-longread-canvas
trimmomatic for long reads
codecreatede/pacbio-nanopore-polyATGC-remove
polyATGC pacbio/oxford nanopore estimator
codecreatede/pacbio-nanopore-repeat-coverage
pacbio/oxford nanopore long reads repeat coverage estimation
codecreatede/pacbiohifi-analyzer
ruby gem for analyzing pacbiohifi genomes and reads
codecreatede/pacbiohifi-awk
awk utilites for anlyzing pacbiohifi genomes and reads
codecreatede/pacbiohifi-desktop
a streamlit application for graphical analyisis of pacbiohifi reads
codecreatede/pacbiohifi-fasta-converter
bash based fasta conversion of pacbiohifi reads and filtering.
codecreatede/pacbiohifi-motif-scanner
extracting specific motifs from pacbio and oxford nanopore long reads.
codecreatede/pacbiohifi-read-analyzer
pacbiohifi read analyzer using recursion
codecreatede/pacbiohifi-report-classifier
pacbiohifi report classifier for any sequencing startups
codecreatede/pacbiohifi-sam-sort
go driven pacbiohifi sam sort for browser requests and caching
codecreatede/pacbiohifiKmerprofile.jl
kmer profile for pacbiohifi reads in julia language
codecreatede/view-pacbiohifi-awk
pacbiohifi view using awk
jacobwindsor/SQANTIExplorer
Inter-sample analysis of SQANTI classifications