PacificBiosciences/HiPhase

Issues

• how to deal with unphased variants in the output

  #44 opened 5 months ago by WeiCSong
  3

• Inconsistent Haplotype

  #42 opened 5 months ago by hangsuUNC
  4

• can the three output vcf directly concatenate?

  #41 opened 5 months ago by WeiCSong
  2

• thread 'main' panicked error

  #39 opened 6 months ago by GuidoGallo
  3

• gVCF + VCF processing

  #40 opened 6 months ago by mrvollger
  6

• possibility to utilize information from phased bam files

  #38 opened 7 months ago by WeiCSong
  4

• ERROR : 0 matched samples for phasing

  #37 opened 7 months ago by Oracle6543
  2

• [Suggestion] reducing messages to STDOUT to speed up the utility

  #32 opened 8 months ago by davidyuyuan
  3

• [Question] Phasing of rs36056539 in NA19226

  #34 opened 8 months ago by davidyuyuan
  3

• [Question] information in the filter column of vcfs

  #33 opened 8 months ago by hangsuUNC
  2

• Normalization of INDELs: required or should be avoided

  #31 opened 9 months ago by davidyuyuan
  3

• Phase vcf with pre phased reads

  #30 opened 9 months ago by mrvollger
  6

• Expected memory usage

  #29 opened 10 months ago by mrvollger
  3

• Error while parsing VCF file: FORMAT columns

  #27 opened a year ago by hangsuUNC
  3

• Running HiPhase with tumor-normal pair

  #26 opened a year ago by aysegokce
  2

• Feature request: haplotag in phased VCF files

  #25 opened a year ago by andyjslee
  2

• RUST error when phasing with SV VCF file

  #7 opened 2 years ago by Audald
  7

• reference letter case issue

  #19 opened a year ago by splaisan
  2

• A question about HP tag

  #18 opened a year ago by oceancongliu
  6

• Encountered max_edit_distance check

  #15 opened 2 years ago by wdecoster
  6

• Recommendations for input vcf

  #16 opened 2 years ago by mrvollger
  3

• segmentation fault (core dumped)

  #13 opened 2 years ago by ZexuanZhao
  2

• Error “thread '<unnamed>' panicked at 'assertion failed: `(left == right)`” occurred while HIPhase working

  #12 opened 2 years ago by linlin-coder
  7

• Poor utilization of threads (maybe user error?)

  #9 opened 2 years ago by mrvollger
  6

• Feature request: CRAM compatible

  #6 opened 2 years ago by Audald
  6

• Feature request: optional file containing read haplotype assignments

  #4 opened 2 years ago by holtjma
  1

• Feature request: ability to ignore read groups

  #3 opened 2 years ago by holtjma
  1

• Question on tagging of supplemental alignments

  #5 opened 2 years ago by mrvollger
  2