short-tandem-repeats

There are 13 repositories under short-tandem-repeats topic.

  • HiPhase

    PacificBiosciences/HiPhase

    Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

    Language:Rust727384

  • quinlan-lab/STRling

    Detect novel (and reference) STR expansions from short-read data

    Language:Nim637499

  • Clinical-Genomics/stranger

    Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

    Language:Python317396

  • WGLab/NanoRepeat

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    Language:Python1711141

  • unique379r/strspy

    STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

    Language:Shell16475

  • j-andrews7/STRprofiler

    A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

    Language:HTML35231

  • PengJia6/MSHunter

    Microsatellite genotyping

    Language:Python2200

  • ShawHahnLab/chiimp

    Computational, High-throughput Individual Identification through Microsatellite Profiling

    Language:R24603

  • aryarm/str_ase

    Allele-specific expression (ASE) for short tandem repeats (STRs)

    Language:Python1120

  • ShawHahnLab/chiimp-paper

    Supporting code for the microsatellite genotyping paper introducing CHIIMP

    Language:Makefile1201

  • MattesMrzik/repeat_util

    Detection and classfication of short tandem repeats in read data

    Language:C++0100

  • serena-aneli/recombulator-x

    :dna: recombination and mutation rates inference from polymorphisms (STRs, SNPs and INDELs) along the X chromosome

    Language:Jupyter Notebook01120

  • rashidalabri/awesome-repeat-dna

    šŸ§¬ A curated list of awesome resources for repeat DNA research

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