holtjma
Staff Bioinformatics Scientist at @PacificBiosciences Previously: Clinical Data Scientist in the @HudsonAlpha Clinical Services Lab
@PacificBiosciences
Pinned Repositories
AU-UAV-ROS
bio_contest_2021
place for keeping my scripts from the 2021 bioinformatics contest
fmlrc
a long-read error correction tool using the multi-string Burrows Wheeler Transform
msbwt
A python toolkit for building and querying multi-string BWTs
suspenders
Automatically exported from code.google.com/p/suspenders
CSL_public_benchmark
Location of public benchmarking; primarily final results
fmlrc2
HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
MethBat
A battery of methylation tools for PacBio HiFi reads
pb-StarPhase
A phase-aware pharmacogenomic diplotyper for PacBio datasets
holtjma's Repositories
holtjma/fmlrc
a long-read error correction tool using the multi-string Burrows Wheeler Transform
holtjma/msbwt
A python toolkit for building and querying multi-string BWTs
holtjma/AU-UAV-ROS
holtjma/bio_contest_2021
place for keeping my scripts from the 2021 bioinformatics contest
holtjma/suspenders
Automatically exported from code.google.com/p/suspenders
holtjma/msbwt-is
A multi-string BWT construction algorithm based on induced sorting
holtjma/starphase_pipeline
holtjma/arewebioyet.github.io
Rust in bioinformatics and computational biology
holtjma/bioconda-recipes
Conda recipes for the bioconda channel.
holtjma/bioconda-utils
Utilities for building and managing bioconda recipes
holtjma/msbwtWebTools
holtjma/pyku
a place for some fun python haikus
holtjma/PyPDF2
A utility to read and write PDFs with Python
holtjma/rust-flagstat
place for replicating flagstat numbers to understand their source
holtjma/rust-lib-reference-genome
In-memory reference genome wrapper utility