Pinned Repositories
aRNAPipe
CSL_public_benchmark
Location of public benchmarking; primarily final results
fmlrc2
igv-grapher
Given a BED file and either a bed file of genomic regions or VCF of structural variant calls, use IGV in headless mode to make graphs.
mixoviz
Detection and visualization of 2n/3n mixoploidy from a VCF
rust-fastleng
a fastx parser for generating sequence length metrics
rust-msbwt
place for building up a msbwt resource in Rust
STEVE
synergy
Community for developers of open-source projects on HPE Synergy and Image Streamer
VarSight
HudsonAlpha Institute for Biotechnology's Repositories
HudsonAlpha/fmlrc2
HudsonAlpha/CSL_public_benchmark
Location of public benchmarking; primarily final results
HudsonAlpha/aRNAPipe
HudsonAlpha/STEVE
HudsonAlpha/VarSight
HudsonAlpha/rust-msbwt
place for building up a msbwt resource in Rust
HudsonAlpha/synergy
Community for developers of open-source projects on HPE Synergy and Image Streamer
HudsonAlpha/igv-grapher
Given a BED file and either a bed file of genomic regions or VCF of structural variant calls, use IGV in headless mode to make graphs.
HudsonAlpha/mixoviz
Detection and visualization of 2n/3n mixoploidy from a VCF
HudsonAlpha/rust-fastleng
a fastx parser for generating sequence length metrics
HudsonAlpha/MethylDeconBloodSubtypes
HudsonAlpha/UDN_SV_export
HudsonAlpha/poison_exon_variant_analysis
This repository details the poison exon analysis detailed in Felker et al.
HudsonAlpha/simple_cromwell_example
An example WDL workflow, input json, and croo json to demonstrate use of HudsonAlpha's Cromwell CLI
HudsonAlpha/auth0-sso-dashboard-extension
HudsonAlpha/Check-Concordance
HudsonAlpha/dd-agent
Datadog Agent
HudsonAlpha/demo_apps
HudsonAlpha/Generate-PRS
HudsonAlpha/jasmine_sv_annotations
A pipeline to merge 2 or more sample SV VCFs into a consensus set and annotate with frequency resources with merging via jasmine
HudsonAlpha/k3s-ansible
HudsonAlpha/LayeredGraph
Methods for building layered graphs and running graph traversal algorithms
HudsonAlpha/policies
Catalyze HIPAA Policy Documentation
HudsonAlpha/Post-Imputation-Pipeline
HudsonAlpha/postgres-operator-examples
Examples for deploying applications with PGO, the Postgres Operator from Crunchy Data
HudsonAlpha/Pre-Imputation-QC-Pipeline
HudsonAlpha/PRS-Pipeline
HudsonAlpha/Python2_3_Conversion
Repo for the python conversion work
HudsonAlpha/R2DGC
HudsonAlpha/skills-pe
Skills practical exercise for interview candidates