karoliinas

Phd student

Tampere UniversityFinland

Pinned Repositories

slivar
genetic variant expressions, annotation, and filtering for great good.
Language:Nim249 11 16023
SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
Language:C++35 3 419
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Language:Perl453 31 1.1k151
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language:Python3.2k 156 835724
FGCI-kickstart-course-notes
Lecture slides, notes and useful links for HPC -users
Language:Jupyter Notebook00
forking-workflow-exercise
Language:Python00
TEDDY_IA
Language:Python12
auto_testing_example_reetta
Language:Python00

karoliinas's Repositories

karoliinas/FGCI-kickstart-course-notes
Lecture slides, notes and useful links for HPC -users
Language:Jupyter Notebook00
karoliinas/forking-workflow-exercise
Language:Python00