broadinstitute/cell-health

Issues

• LoadData CSV File Missing

  #162 opened 2 years ago by jenna-tomkinson
  1

• Error with importing cell-profilier pipelines

  #159 opened 4 years ago by wagenrace
  4

• Link in documentation give 404

  #157 opened 4 years ago by wagenrace
  1

• Uploading Image Files to IDR and BBBC

  #106 opened 4 years ago by gwaybio
  54

• Cell health cell count model is correlated to CellProfiler cc_cc_n_objects but does not use the feature in the model

  #105 opened 4 years ago by gwaybio
  10

• Meeting 12/16/2019 - Notes

  #90 opened 4 years ago by gwaybio
  0

• How many "independent" cell health phenotype signals can be predicted well?

  #86 opened 4 years ago by gwaybio
  0

• Where do the DMSO treated profiles land in Repurposing UMAP?

  #84 opened 4 years ago by gwaybio
  6

• Across all models, are certain cell painting features more explanatory than others?

  #64 opened 4 years ago by gwaybio
  5

• Model Performance Varies across Cell Lines

  #61 opened 4 years ago by gwaybio
  8

• Apply models to repurposing cell painting set

  #52 opened 4 years ago by gwaybio
  2

• Add Functionality to Permute Test Set

  #45 opened 4 years ago by gwaybio
  1

• Not all Models are Fit

  #42 opened 4 years ago by gwaybio
  0

• Get Sample Images

  #33 opened 4 years ago by gwaybio
  0

• How were guides selected?

  #29 opened 4 years ago by gwaybio
  1

• More Morpheus Heatmaps

  #51 opened 4 years ago by gwaybio
  0

• Investigate specific CRISPR genes

  #53 opened 4 years ago by gwaybio
  4

• Predicting Cell Health Dyes

  #68 opened 4 years ago by gwaybio
  2

• Add Metadata Files

  #93 opened 4 years ago by gwaybio
  0

• Machine learning robustness analysis

  #144 opened 4 years ago by gwaybio
  3

• Retrieve CellProfiler pipelines for the Cell Painting datasets

  #146 opened 4 years ago by shntnu
  4

• Measure roundness of nuclei using PE Harmony

  #148 opened 4 years ago by shntnu
  1

• Add MOA annotations to dashboard

  #87 opened 4 years ago by gwaybio
  1

• Add UMAP to dashboard

  #88 opened 4 years ago by gwaybio
  0

• Increase Viability Performance

  #49 opened 4 years ago by gwaybio
  1

• Consider Trimming Top Values by some Threshold

  #34 opened 4 years ago by gwaybio
  1

• Check Ploidy of Cell Lines

  #28 opened 4 years ago by gwaybio
  1

• Machine Learning Covariate Features

  #23 opened 4 years ago by gwaybio
  5

• Cell Health Dyes

  #18 opened 4 years ago by gwaybio
  2

• Generating Heterogeneity Features

  #17 opened 4 years ago by gwaybio
  3

• Cleaning Cell Health Assay Label Data

  #12 opened 4 years ago by gwaybio
  0

• Reprocess image-based profiles with `robustize_mad`

  #113 opened 5 years ago by gwaybio
  0

• Link each compound to its page in the repurposing hub

  #102 opened 5 years ago by shntnu
  0

• Change classification binarization

  #78 opened 5 years ago by gwaybio
  3

• Select Interesting Compounds to Validate

  #98 opened 5 years ago by gwaybio
  2

• Consensus UMAP PDF does not specify which model

  #82 opened 5 years ago by gwaybio
  0

• Check L1000 for CRISPR profiles

  #89 opened 5 years ago by gwaybio
  0

• Train Cell-Health Models with intersection of Repurposing Hub Features

  #77 opened 5 years ago by gwaybio
  0

• Complete Single Cell Upload

  #72 opened 5 years ago by gwaybio
  1

• Add single cell cell painting data to online resource

  #62 opened 5 years ago by gwaybio
  1

• Regression Performance in Test sets

  #40 opened 5 years ago by gwaybio
  2

• Change Colors of Target Variables in Performance Summary

  #50 opened 5 years ago by gwaybio
  0

• Reprocess with Pycytominer - Compress Output

  #55 opened 5 years ago by gwaybio
  0

• Reprocess Cell Painting Features

  #35 opened 5 years ago by gwaybio
  0

• Data Processing and Machine Learning Approaches

  #24 opened 5 years ago by gwaybio
  1

• What is the correlation across cell health labels?

  #21 opened 5 years ago by gwaybio
  1

• From this experiment, `ITGAV` and `MYC` are the highest correlating genes across guides

  #14 opened 5 years ago by gwaybio
  1

• Add AUC to ROC and PR curves plots

  #32 opened 5 years ago by gwaybio
  1

• Cell IDs

  #26 opened 5 years ago by gwaybio
  0

• [Hotfix] Typo in x axis title of CRISPR replicate guide correlation

  #9 opened 5 years ago by gwaybio
  0