gwaybio
Assistant Professor in Department of Biomedical Informatics @wayscience | Data science, machine learning, cell morphology, genomics, and cancer
University of Colorado AnschutzAurora, Colorado
Pinned Repositories
cell-health
Predicting Cell Health with Morphological Profiles
lincs-cell-painting
Processed Cell Painting Data for the LINCS Drug Repurposing Project
CytoTable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
pycytominer
Python package for processing image-based profiling data
brca_lowstage_DMGRs
The repository stores the analytical code for the pre-release of the manuscript titled "Tumor subtype and cell type independent DNA methylation alternations reveals twelve genes associated with low stage breast carcinoma".
gancy
CytoData 2019 Hackathon at Heidelberg
keras_gan
Experimenting with Generative Adversarial Networks using the Keras library in Python
tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
phenotypic_profiling
Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles
pyroptosis_signature_image_profiling
This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.
gwaybio's Repositories
gwaybio/.github-cytomining
A special GitHub repository for setting the Cytomining organization profile and default community health files.
gwaybio/2018_05_30_ResistanceMechanisms_Kapoor
Predicting pharmacodynamic responses to cancer drugs using cell morphology
gwaybio/aspera-client-docker
Docker image for downloading IDR datasets
gwaybio/cell-health-data
Data processing for the Cell Painting data from the Cell Health experiments
gwaybio/cell-morphology-power-analyses
Power analyses for cell morphology readouts
gwaybio/cellgenerator
gwaybio/CFReT_data
Data processing for CFReT pilot images.
gwaybio/CPBS7601
Course on computing skills in bioinformatics
gwaybio/cytominer_database-feedstock
A conda-smithy repository for cytominer_database.
gwaybio/CytoSnake
This is not a pipe
gwaybio/CytoTable
Transform data for processing image-based profiling readouts with Pycytominer.
gwaybio/Cytotoxic-Nuisance-Metadata-Analysis
Processing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.
gwaybio/drug_viability_data
Exploring large-scale drug viability datasets
gwaybio/gene_dependency_representations
gwaybio/IC_Test
This repository holds all of the research and code used to develop IC Test.
gwaybio/Interstellar_Project
This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.
gwaybio/jump-datasets
Images and other data from the JUMP Cell Painting Consortium
gwaybio/JUMP-single-cell
Single cell analysis of the JUMP Cell Painting consortium data
gwaybio/lincs-profiling-comparison
Analyzing and comparing signal found in different profiling technologies
gwaybio/mitocheck_data
All information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).
gwaybio/MNIST_TD-VAE
Temporal Difference Variational Auto-Encoder (TD-VAE) (Implementation in PyTorch)
gwaybio/nf1_cellpainting_data
This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.
gwaybio/NF1_SchwannCell_data
Data processing for NF1 Schwann cell pilot images.
gwaybio/NF1_SchwannCell_data_analysis
gwaybio/OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
gwaybio/phenotypic_profiling_model
Training and validating ML model using data from https://github.com/WayScience/mitocheck_data
gwaybio/publicly-available-microscopy-data
Compiling and describing publicly available microscopy datasets
gwaybio/pycytominer
cytominer python package
gwaybio/pycytominer-feedstock
A conda-smithy repository for pycytominer.
gwaybio/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks