cytomining

Pinned Repositories

copairs
Find pairs and compute metrics between them.
Language:Python7 6 374
cytominer
Methods for Image-Based Cell Profiling
Language:R49 7 7828
cytominer-database
[DEPRECATED] A package for storing morphological profiling data.
Language:Python10 3 6512
cytominer-eval
[Deprecated] Common Evaluation Metrics for DataFrames
Language:Python7 4 3311
CytoTable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
Language:Python7 5 1255
DeepProfiler
Morphological profiling using deep learning
Language:Python107 12 22440
DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
Language:HTML8 5 193
profiling-handbook
Image-based Profiling Handbook
9 3 298
profiling-recipe
Image-based Profiling Recipe
Language:Python8 5 1526
pycytominer
Python package for processing image-based profiling data
Language:Python81 6 22236

cytomining's Repositories

cytomining/DeepProfiler
Morphological profiling using deep learning
Language:Python107 12 22440
cytomining/pycytominer
Python package for processing image-based profiling data
Language:Python81 6 22236
cytomining/cytominer
Methods for Image-Based Cell Profiling
Language:R49 7 7828
cytomining/cytominer-database
[DEPRECATED] A package for storing morphological profiling data.
Language:Python10 3 6512
cytomining/profiling-handbook
Image-based Profiling Handbook
9 3 298
cytomining/DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
Language:HTML8 5 193
cytomining/profiling-recipe
Image-based Profiling Recipe
Language:Python8 5 1526
cytomining/copairs
Find pairs and compute metrics between them.
Language:Python7 6 374
cytomining/cytominer-eval
[Deprecated] Common Evaluation Metrics for DataFrames
Language:Python7 4 3311
cytomining/CytoTable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
Language:Python7 5 1255
cytomining/cytoplot
[Deprecated] Package for visualizing high-dimensional single-cell data
Language:R4 1 62
cytomining/matric
[Deprecated] Calculate quality metrics for readouts from high-throughput profiling experiments
Language:R4 2 61
cytomining/cytominer-vm
[DEPRECATED] Packer scripts to create VMs for running image-based profiling workflows on a cluster
Language:Shell2 2 62
cytomining/.github
A special GitHub repository for setting the Cytomining organization profile and default community health files.
1 5 12
cytomining/cytominer-python
DEPRECATED A Python package for mining patterns in perturbations
Language:Jupyter Notebook1 2 01
cytomining/cytominer-transport
[Deprecated]
Language:Python1 4 72
cytomining/cytominergallery
[Deprecated] A Gallery of Cytominer Vignettes
Language:R1 3 296
cytomining/cytostats
[Deprecated] Statistical Functions for Single-Cell Analysis
Language:C++1 4 1
cytomining/evalzoo
[Deprecated] Evaluate metrics using cytominer-eval and matric
Language:HTML1 5 12
cytomining/pipeline-examples
Example pipelines for training purposes
Language:Jupyter Notebook1 4 12
cytomining/pycytominer-Docker
Language:Dockerfile1 5 12
cytomining/profiling-template
Image-based Profiling Template
0 4 121
cytomining/cytomining.github.io
Cytomining organization GitHub Pages configuration.
5 01
cytomining/CytoTable-benchmarks
Benchmarks for CytoTable and related.
Language:Jupyter Notebook1 21
cytomining/cytotools
[Deprecated] Command-line Tools to Get Things Done Using Cytominer
Language:R6 20
cytomining/matric-vm
[Deprecated] Packer scripts for creating a matric VM
4 01