Pinned Repositories
copairs
Find pairs and compute metrics between them.
cytominer
Methods for Image-Based Cell Profiling
cytominer-database
A package for storing morphological profiling data.
cytominer-eval
Common Evaluation Metrics for DataFrames
CytoTable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
DeepProfiler
Morphological profiling using deep learning
DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
profiling-handbook
Image-based Profiling Handbook
profiling-recipe
Image-based Profiling Recipe
pycytominer
Python package for processing image-based profiling data
cytomining's Repositories
cytomining/DeepProfiler
Morphological profiling using deep learning
cytomining/pycytominer
Python package for processing image-based profiling data
cytomining/cytominer
Methods for Image-Based Cell Profiling
cytomining/cytominer-database
A package for storing morphological profiling data.
cytomining/profiling-handbook
Image-based Profiling Handbook
cytomining/profiling-recipe
Image-based Profiling Recipe
cytomining/cytominer-eval
Common Evaluation Metrics for DataFrames
cytomining/copairs
Find pairs and compute metrics between them.
cytomining/DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
cytomining/cytoplot
Package for visualizing high-dimensional single-cell data
cytomining/CytoTable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
cytomining/matric
Calculate quality metrics for readouts from high-throughput profiling experiments
cytomining/cytominer-vm
Packer scripts to create VMs for running image-based profiling workflows on a cluster
cytomining/.github
A special GitHub repository for setting the Cytomining organization profile and default community health files.
cytomining/cytominer-python
DEPRECATED A Python package for mining patterns in perturbations
cytomining/cytominer-transport
cytomining/cytominergallery
A Gallery of Cytominer Vignettes
cytomining/cytostats
Statistical Functions for Single-Cell Analysis
cytomining/evalzoo
Evaluate metrics using cytominer-eval and matric
cytomining/pipeline-examples
Example pipelines for training purposes
cytomining/pycytominer-Docker
cytomining/profiling-template
Image-based Profiling Template
cytomining/cytomining.github.io
Cytomining organization GitHub Pages configuration.
cytomining/CytoTable-benchmarks
Benchmarks for CytoTable and related.
cytomining/cytotools
Command-line Tools to Get Things Done Using Cytominer
cytomining/matric-vm
Packer scripts for creating a matric VM