cytomining/copairs

Issues

• Can queries really be permuted independently?

  #69 opened a month ago by danr
  0

• Add notebook explaining how to compute map

  #22 opened a month ago by johnarevalo
  1

• Set linting

  #65 opened a month ago by johnarevalo
  0

• Allow absolute cosine similarity

  #55 opened a month ago by shntnu
  1

• Set progress bar as optional

  #67 opened 2 months ago by johnarevalo
  0

• Include recall computation

  #66 opened 2 months ago by johnarevalo
  0

• Adding a license

  #63 opened 6 months ago by ritvikvasan
  1

• A profile's average precision is 1 if it contains any NaNs

  #59 opened 9 months ago by jessica-ewald
  3

• Check behavior of np.inf feature values

  #61 opened 9 months ago by johnarevalo
  0

• Copairs will fail when missing writing permission

  #57 opened 9 months ago by afermg
  0

• Make consistent variable names with compute values in `dists` vs similarities

  #35 opened a year ago by johnarevalo
  1

• Move sampling to query

  #23 opened a year ago by johnarevalo
  1

• Length of values (m) does not match length of index (n) when no valid pairs are found for 1+ samples.

  #50 opened a year ago by johnarevalo
  1

• When computing mAP, raise error if there are not valid pairs

  #30 opened a year ago by johnarevalo
  0

• Add filter param for positive pairs in mAP computation

  #34 opened a year ago by johnarevalo
  1

• [bug] AP of 1.0 should have min p-value

  #49 opened a year ago by alxndrkalinin
  7

• Adding `pd.query()` style selections raises index error

  #52 opened a year ago by axiomcura
  0

• expose intermediate outputs in map calculation

  #36 opened a year ago by johnarevalo
  6

• Check meta and feats have the same number of rows in `run_pipeline` function

  #26 opened a year ago by johnarevalo
  0

• Rename columns after aggregation

  #25 opened a year ago by johnarevalo
  1

• compute.compute_ap_contiguos returns NaNs silently

  #45 opened a year ago by afermg
  0

• Consider change the return for `get_all_pairs` from dict to list

  #29 opened a year ago by johnarevalo
  1

• Implement random baseline in tensorflow

  #17 opened a year ago by johnarevalo
  0

• get_all_pairs should check that sameby/diffby are present in the matcher column list

  #39 opened a year ago by alxndrkalinin
  0

• `get_all_pairs` fails with empty sameby & > 2 cols in diffby

  #40 opened a year ago by alxndrkalinin
  0

• accepting pandas `query` conditions in sameby/diffby

  #41 opened a year ago by alxndrkalinin
  0

• Track potential discrepancies between `matric` and `copairs`

  #37 opened a year ago by shntnu
  2

• Pair creation interface

  #38 opened a year ago by alxndrkalinin
  0

• Implement `_only_diffby` in multilabel column

  #31 opened 2 years ago by johnarevalo
  0

• Add support for multi label in mAP calculation

  #18 opened 2 years ago by johnarevalo
  0

• Allow multiple columns in mAP calculations

  #19 opened 2 years ago by johnarevalo
  0

• Add tests for run_pipeline

  #20 opened 2 years ago by johnarevalo
  0

• Rename Sampler class to Indexer

  #7 opened 2 years ago by johnarevalo
  0

• Rename groupby

  #5 opened 2 years ago by johnarevalo
  0

• single string as a diffby

  #2 opened 2 years ago by alxndrkalinin
  0

• Remove hard coded value

  #4 opened 2 years ago by johnarevalo
  0

• Change defaultdict return to a regular dict

  #6 opened 2 years ago by johnarevalo
  0