Pinned Repositories
DeepProfiler
Morphological profiling using deep learning
profiling-recipe
Image-based Profiling Recipe
profiling-template
Image-based Profiling Template
pycytominer
Python package for processing image-based profiling data
CellProfiler-Analyst
Software for exploring and analyzing large, high-dimensional image-derived data.
cytohack2017_profiling_challenge
cytomining-hackathon-wiki
CytoData 2016 – origin story
evalzoo
Evaluate metrics using cytominer-eval and matric
lincs-cell-painting
Processed Cell Painting Data for the LINCS Drug Repurposing Project
shntnu's Repositories
shntnu/evalzoo
Evaluate metrics using cytominer-eval and matric
shntnu/2018_04_20_Rosetta
Translating morphology data across single-cell modalities (CZI)
shntnu/2023_12_JUMP_data_only_vignettes
Collection of JUMP documentation and projects for internal and public consumption
shntnu/2023_Moshkov_NatComm
Predicting assays Using Morphological Analysis
shntnu/awesome-cytodata
A curated list of awesome cytodata resources
shntnu/cellpainting-gallery
Cell Painting Gallery
shntnu/cellprofiler-on-Terra
Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.
shntnu/cpg
Cell painting gallery
shntnu/cpg0003-rosetta
shntnu/cytoskel
Cloud infrastrcuture abstraction
shntnu/datasets
Images and other data from the JUMP Cell Painting Consortium
shntnu/DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
shntnu/DeepProfilerExperiments
shntnu/dummy
shntnu/EFAAR_benchmarking
External repo for the EFAAR benchmarking paper
shntnu/evalzoo-docker
shntnu/grit-benchmark
Benchmarking a metric used to evaluate a perturbation strength
shntnu/jump-profiling-recipe
Workflow for processing cpg0016-jump profiles
shntnu/jump-profiling-recipe-old
temp
shntnu/lamin-blog
Data science & engineering in biology.
shntnu/luad-cell-painting
Repository for analysis of CellPainting data in the LUAD dataset
shntnu/matric-vm
Packer scripts for creating a matric VM
shntnu/neurips-cpjump1
shntnu/open-data-registry
A registry of publicly available datasets on AWS
shntnu/paper-bray2017
Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay.
shntnu/pycytominer
cytominer python package
shntnu/renvtest
shntnu/rxrx3
Metadata of https://www.rxrx.ai/rxrx3 in Parquet format
shntnu/snowChat
Chat snowflake database - Text to SQL
shntnu/sphering
Experiments with whitening