shntnu

shntnu's Stars

• openai/chatgpt-retrieval-plugin

  The ChatGPT Retrieval Plugin lets you easily find personal or work documents by asking questions in natural language.

  Language:Python21.1k3232313.7k

• guidance-ai/guidance

  A guidance language for controlling large language models.

  Language:Jupyter Notebook19.2k1185481k

• microsoft/promptbase

  All things prompt engineering

  Language:Python5.4k5915302

• pykeen/pykeen

  🤖 A Python library for learning and evaluating knowledge graph embeddings

  Language:Python1.7k27553189

• uwescience/shablona

  A template for small scientific python projects

  Language:Jupyter Notebook6082634145

• macarthur-lab/gene_lists

  List of gene lists for genomic analyses.

  Language:Python21640481

• jump-cellpainting/datasets

  Images and other data from the JUMP Cell Painting Consortium

  Language:Shell163127517

• deanmarchiori/analysis-flow

  Data Analysis Workflows & Reproducibility Learning Resources

  112829

• cytomining/pycytominer

  Python package for processing image-based profiling data

  Language:Python80622236

• Swarchal/platetools

  An R package for plotting microtitre plates

  Language:R5483015

• robertdj/renv-docker

  A guide to getting {renv} projects into Docker images

  Language:R53306

• carpenter-singh-lab/2022_Haghighi_NatureMethods

  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

  Language:Jupyter Notebook4631210

• CHTC/templates-GPUs

  Template job submissions using GPUs in CHTC

  Language:Python413712

• JWally/tadpoles-media-downloader

  Hack method to download all of your media from tadpoles.com

  Language:JavaScript172611

• hdcdstr8fwd/foundation-theme

  Core theme files for Hugo Foundation.

  Language:HTML128

• rafalab/misc

  Miscellaneous documents

  12403

• cytomining/profiling-handbook

  Image-based Profiling Handbook

  93298

• cytomining/DeepProfiler-handbook

  Documentation for installing and using of DeepProfiler

  Language:HTML85193

• nfahlgren/github_stats

  Keep track of clones and views for your GitHub repositories

  Language:Python8511

• theislab/jump-cpg0016-segmentation

  Snakemake pipeline used to segment the cpg0016 dataset of the JUMP-Cell Painting Consortium

  Language:Jupyter Notebook811

• cytomining/cytominer-eval

  [Deprecated] Common Evaluation Metrics for DataFrames

  Language:Python743311

• broadinstitute/grit-benchmark

  Benchmarking a metric used to evaluate a perturbation strength

  Language:Jupyter Notebook6695

• gwatkinson/jump_download

  Code to download the JUMP Cell Painting dataset with some simple processing

  Language:Python6120

• cytomining/matric

  [Deprecated] Calculate quality metrics for readouts from high-throughput profiling experiments

  Language:R4261

• broadinstitute/pooled-cell-painting-image-processing

  Language:Jupyter Notebook39173

• broadinstitute/cpg

  Cell painting gallery

  Language:TypeScript25333

• Aitslab/awesome-biomaterials-datascience

  awesome list of datasets, databases and data science tools/workflows for studying biomaterials

  1100

• broadinstitute/jump-profiling-recipe

  Workflow for processing cpg0016-jump profiles

  Language:Python1585

• nragusa/cdk-init

  Cookiecutter template to initialize a CDK project using pipenv

  Language:Python10

• shntnu/evalzoo

  Evaluate metrics using cytominer-eval and matric

  Language:HTML1100