CellProfiler

Software for quantitative analysis of biological images

Cambridge, MA

Pinned Repositories

CellProfiler
An open-source application for biological image analysis
Language:Python967 46 3.3k390
CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Language:Python152 20 29073
CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
Language:Python63 9 10369
centrosome
An open source image processing library
Language:Python18 10 5936
examples
Example CellProfiler pipelines.
Language:Makefile14 7 1714
notebooks
Jupyter notebooks for CellProfiler and friends
Language:Jupyter Notebook12 5 26
python-bioformats
Read and write life sciences file formats
Language:Python136 15 11847
python-javabridge
Python wrapper for the Java Native Interface
Language:Python22 3 1413
stitching
Image stitching
Language:Python12 5 36
tutorials
CellProfiler tutorial pipelines and images
Language:Jupyter Notebook91 10 1986

CellProfiler's Repositories

CellProfiler/CellProfiler
An open-source application for biological image analysis
Language:Python967 46 3.3k390
CellProfiler/CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Language:Python152 20 29073
CellProfiler/python-bioformats
Read and write life sciences file formats
Language:Python136 15 11847
CellProfiler/tutorials
CellProfiler tutorial pipelines and images
Language:Jupyter Notebook91 10 1986
CellProfiler/CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
Language:Python63 9 10369
CellProfiler/python-javabridge
Python wrapper for the Java Native Interface
Language:Python22 3 1413
CellProfiler/centrosome
An open source image processing library
Language:Python18 10 5936
CellProfiler/examples
Example CellProfiler pipelines.
Language:Makefile14 7 1714
CellProfiler/notebooks
Jupyter notebooks for CellProfiler and friends
Language:Jupyter Notebook12 5 26
CellProfiler/stitching
Image stitching
Language:Python12 5 36
CellProfiler/CellProfiler-1.0
:warning: ARCHIVED :warning: CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler
Language:MATLAB9 10 38
CellProfiler/core
Core classes and components used by CellProfiler
Language:Python6 3 1124
CellProfiler/distribution
Everything needed to build CellProfiler for your favorite environment.
Language:Python4 5 166
CellProfiler/cellprofiler.github.com-backup
OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.
Language:HTML3 15 332
CellProfiler/CPCharm
Language:Python3 12 02
CellProfiler/cellprofiler.github.com
CellProfiler Website
Language:JavaScript2 12 1164
CellProfiler/docker
Language:Makefile2 10 610
CellProfiler/library
Language:Python2 4 01
CellProfiler/prokaryote
CellProfiler’s Java dependencies
Language:Java2 11 1611
CellProfiler/BatchProfiler
Language:Python1 12 241
CellProfiler/CellProfiler-build
Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute
Language:Python1 12 03
CellProfiler/jenkins
Language:Shell1 9 52
CellProfiler/knime-bridge
ZMQ connection between CellProfiler and Knime
Language:Java1 10 61
CellProfiler/meoir
Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org
Language:Python1 4 01
CellProfiler/.github
Default files are stored here, such as code of conduct
4 0
CellProfiler/CellProfiler-Explorer
Web app for exploring CellProfiler data and combining with metadata
Language:Python6 0
CellProfiler/CellProfiler-rpm
9 01
CellProfiler/pyinstaller
Freeze (package) Python programs into stand-alone executables
Language:Python1 01
CellProfiler/RFC
A place to propose new features for CellProfiler
9 0
CellProfiler/tutorial
Language:Python4 23