CellProfiler/CellProfiler

Issues

• Update the ImageProcessing template to be a bit friendlier

  #4899 opened a month ago by bethac07
  0

• Cell Profiler 4.2.6 _ cellpose modules "“failed to load custom model”

  #4898 opened 2 months ago by jimmib78
  0

• CI Bug - Core tests run infinitely except for when you look at them hard enough

  #4859 opened 5 months ago by gnodar01
  5

• Issue with measureobjectsizeshape

  #4896 opened 2 months ago by CJRobertson40
  0

• More options for RescaleIntensity

  #4891 opened 2 months ago by bethac07
  0

• MeasureImageOverlap's viewer is not set for 3D

  #4890 opened 2 months ago by bethac07
  0

• SaveImages Module: Cannot save 3-plane image as TIFF

  #4889 opened 2 months ago by mdposkus
  0

• CalculateMath module doesn't read the measurements come from the module MeasureImageSkeleton

  #4888 opened 2 months ago by PaulaLlanos
  0

• File => Export => Image Set List Listing...

  #4886 opened 2 months ago by ErinWeisbart
  4

• Make EnhanceEdges use Magenta/Green not Red/Green

  #4885 opened 2 months ago by bethac07
  0

• Installation from source failing

  #4883 opened 3 months ago by kruettner
  13

• RunOmnipose HTTP ERROR 500

  #4884 opened 3 months ago by zhan4429
  0

• Forum reported error (not yet validated) - issue with ClassifyObjects when 2 copies of the module included

  #4882 opened 3 months ago by bethac07
  0

• Make util for parent/child object relationships

  #4881 opened 3 months ago by ErinWeisbart
  0

• Certain characters in comment boxes DELETE THE PIPELINE when trying to export it

  #4879 opened 3 months ago by emiglietta
  9

• What if anything can we do to check ability to faithfully export the pipeline before overwriting?

  #4880 opened 3 months ago by bethac07
  1

• MeasureColocalization runtime different in CP 5 + GUI mode than in headless or generally in CP 4

  #4878 opened 3 months ago by gnodar01
  5

• Flag Image module not considering 'LocalFocusScore' and 'Correlation' measurements

  #4875 opened 4 months ago by sugan89
  0

• FlagImage support for CPA3 classifiers

  #4873 opened 4 months ago by DavidStirling
  2

• Unable to run omnipose models in cellpose docker

  #4870 opened 4 months ago by rsenft1
  7

• IdentifySecondaryObjects: Improper removal of objects touching image edge

  #4872 opened 4 months ago by braymp
  0

• Installation problem on Ubuntu

  #4871 opened 4 months ago by lbssn
  2

• source code installation JVM problem

  #4869 opened 4 months ago by olasabet
  18

• Issue with pydantic-core installation

  #4868 opened 4 months ago by jaggbow
  2

• Plane-wise filtering for 3D images

  #4866 opened 4 months ago by emiglietta
  0

• Python 3.9 not available in Ubuntu 18.04

  #4864 opened 4 months ago by wheelern
  1

• Analyze Images not using CPU or making progress

  #4863 opened 4 months ago by dana-mcc
  0

• IdentifyPrmaryObjects: Error when using adaptive thresholding on completely masked image

  #4862 opened 5 months ago by braymp
  0

• ModuleNotFoundError: No module named 'numpy'

  #4849 opened 5 months ago by tubulocristate
  6

• RunImageJMacro throws an ascii codec error in 4.2.6 Mac built app bundle

  #4858 opened 5 months ago by bethac07
  3

• Discarded primary objects are being included in output

  #4857 opened 5 months ago by jenna-tomkinson
  5

• RuntimeWarning : Degrees of Freedom and Mean of Empty Slice

  #4856 opened 5 months ago by spirpinias
  0

• The program froze while processing multiple images using cellprofiler's Analyze images mode

  #4851 opened 5 months ago by YQH536
  2

• Building from Source - ERROR: Directory '.' is not installable. Neither 'setup.py' nor 'pyproject.toml' found.

  #4855 opened 5 months ago by spirpinias
  7

• How to use Module.get_dictionary? Odd sharing behavior

  #4854 opened 5 months ago by troycomi
  2

• The program froze while processing multiple images using cellprofiler's Analyze images mode

  #4850 opened 5 months ago by YQH536
  0

• FlagImage Fails to RUN

  #4848 opened 6 months ago by BiophysNinja
  0

• ExportToSpreadsheet should save to disk during the analysis

  #4845 opened 6 months ago by tilenkranjc
  0

• LoadData module ignores grouping

  #4844 opened 6 months ago by tilenkranjc
  0

• Unable to install from source on MacOS M1

  #4843 opened 7 months ago by aguycalledankit
  21

• ExportToDatabase - unrecoverable error (Feature ExportToDb_Channels for ExportToDb does not exist)

  #4841 opened 7 months ago by CEDRICHK
  1

• SaveImages module - save Movie/stack bug

  #4842 opened 7 months ago by emiglietta
  0

• EnhanceOrSuppressFeatures module cyclic behaviour in fast mode

  #4840 opened 8 months ago by emiglietta
  0

• Add "remove objects touching border" to ConvertImageToObjects module

  #4839 opened 8 months ago by todd-fallesen
  0

• Wrong description for the "Create a CellProfiler Analyst workspace file" in "ExportToDatabase"

  #4838 opened 8 months ago by AssilZ
  0

• Structuring element documentation is incomplete

  #4837 opened 8 months ago by emiglietta
  0

• Built CellProfiler crashing on Mac Sonoma

  #4836 opened 8 months ago by bethac07
  0

• More metrics for MeasureObjectOverlap

  #4834 opened 8 months ago by bethac07
  0

• Issue with characters in notes panels (again)

  #4833 opened 8 months ago by bethac07
  0

• CellProfiler crashes when displaying three objects and an image on "view workspace"

  #4832 opened 9 months ago by afermg
  0