ErinWeisbart
Computational Biologist who really loves documentation. Staff scientist in the @ciminilab at @broadinstitute.
@broadinstitute
Pinned Repositories
cpg
CPG-tools
cytodata-hackathon-2018
Ideas, code and results of the 2018 CytoData hackathon
cytodata-hackathon-base
cytoskel
Cloud infrastrcuture abstraction
Distributed-FIJI
Like Distributed-CellProfiler, but for FIJI. Run FIJI scripts in parallel in the cloud, using infrastructure you define.
ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
open-data-registry
A registry of publicly available datasets on AWS
pooled-cell-painting-profiling-template
:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
pooled-cp-profiling-recipe
:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
profiling-handbook
Image-based Profiling Handbook
ErinWeisbart's Repositories
ErinWeisbart/Distributed-FIJI
Like Distributed-CellProfiler, but for FIJI. Run FIJI scripts in parallel in the cloud, using infrastructure you define.
ErinWeisbart/cpg
CPG-tools
ErinWeisbart/cytodata-hackathon-2018
Ideas, code and results of the 2018 CytoData hackathon
ErinWeisbart/cytodata-hackathon-base
ErinWeisbart/cytoskel
Cloud infrastrcuture abstraction
ErinWeisbart/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
ErinWeisbart/open-data-registry
A registry of publicly available datasets on AWS
ErinWeisbart/pooled-cell-painting-profiling-template
:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
ErinWeisbart/pooled-cp-profiling-recipe
:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
ErinWeisbart/profiling-handbook
Image-based Profiling Handbook
ErinWeisbart/profiling-recipe
Image-based Profiling Recipe
ErinWeisbart/pycytominer
cytominer python package