bethac07
Bioimage analysis, @broadinstitute We make tools (like @CellProfiler + @piximi + bilayers) and resources (@COBA-NIH) for less-computational scientists
Broad InstituteCambridge, MA, USA
Pinned Repositories
AuSPICES
Automated System Processing Infinite Cellpainting Experiments with Step functions
HandyTools
Various tools for renaming files, working with LightCycler qPCR data, other tweaks
profiling-recipe
Image-based Profiling Recipe
qi_2024_analysis_lab_manual
imaging-platform-pipelines
Cell Painting and other pipelines from the Imaging Platform
CellProfiler
An open-source application for biological image analysis
CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
tutorials
CellProfiler tutorial pipelines and images
Distributed-CellProfiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
bethac07's Repositories
bethac07/HandyTools
Various tools for renaming files, working with LightCycler qPCR data, other tweaks
bethac07/profiling-recipe
Image-based Profiling Recipe
bethac07/qi_2024_analysis_lab_manual
bethac07/distribution
Everything needed to build CellProfiler for your favorite environment.
bethac07/jupyter-book
Create beautiful, publication-quality books and documents from computational content.
bethac07/MicroscopyForBeginnersReferenceGuide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
bethac07/AuSPICES
Automated System Processing Infinite Cellpainting Experiments with Step functions
bethac07/bioimagebook.github.io
An introduction to bioimage analysis - http://bioimagebook.github.io
bethac07/CellProfiler
An open-source application for biological image analysis
bethac07/CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
bethac07/core
Core classes and components used by CellProfiler
bethac07/cytominer
Library for mining patterns in perturbation data
bethac07/cytominer_database-feedstock
A conda-smithy repository for cytominer_database.
bethac07/Distributed-FIJI
Like Distributed-CellProfiler, but for FIJI. Run FIJI scripts in parallel in the cloud, using infrastructure you define.
bethac07/Distributed-Something
Run encapsulated docker containers that do something in the Amazon Web Services infrastructure.
bethac07/Distributed-Something-1
Run encapsulated docker containers that do... something in the Amazon Web Services infrastructure.
bethac07/DL-MBL-2024
bethac07/HandLens
bethac07/homebrew-core
🍻 Default formulae for the missing package manager for macOS
bethac07/instance_segmentation
bethac07/instanseg
bethac07/my_book
bethac07/profiling-handbook
Image-based Profiling Handbook
bethac07/pycytominer
cytominer python package
bethac07/pycytominer-feedstock
A conda-smithy repository for pycytominer.
bethac07/python-javabridge
Python wrapper for the Java Native Interface
bethac07/redactle-notebook
bethac07/tutorial
bethac07/tutorials
CellProfiler tutorial pipelines and images
bethac07/UNet_3D_C_elegans
3D segmentation of the C. elegans germ line