DistributedScience/Distributed-CellProfiler

Issues

• Spot Fleet Request Configuration Invalid

  #178 opened a month ago by znavidi
  2

• Fix credential handling

  #145 opened 2 months ago by ErinWeisbart
  3

• Print easier to read memory used metrics?

  #158 opened 2 months ago by ErinWeisbart
  2

• Return useful error if download files don't exist

  #162 opened 2 months ago by ErinWeisbart
  0

• Try/except handling for DOWNLOAD_FILES

  #168 opened 2 months ago by bethac07
  2

• More documentation on using plugins

  #138 opened 2 months ago by ErinWeisbart
  0

• Change anything re: plugins?

  #154 opened 2 months ago by ErinWeisbart
  1

• Plugin usage not pointing to the new plugin repo structure

  #164 opened 2 months ago by bethac07
  1

• Think about - exposing number of retries before dead messages in the config file

  #165 opened 2 months ago by bethac07
  0

• Better error message for failed Transfer of CellProfiler logs to S3

  #144 opened 2 months ago by ErinWeisbart
  2

• Look into new role creation

  #131 opened 2 months ago by bethac07
  2

• Enable S3FS mount of path within bucket

  #137 opened 2 months ago by ErinWeisbart
  1

• Add optional CloudWatch Agent

  #176 opened 2 months ago by ErinWeisbart
  0

• Very slow CellProfiler pipeline start up times

  #170 opened 3 months ago by gareth-rogers-healx
  5

• Enable configurable load_data.csv location in config

  #160 opened 3 months ago by ErinWeisbart
  0

• Need to update AMI for spot fleet config

  #161 opened 9 months ago by Gabcomolet
  1

• Your spot fleet request is causing an error and is now being cancelled

  #151 opened a year ago by sooheon
  1

• ECS issue : No Container Instances were found in your cluster.

  #126 opened 10 months ago by nicolasboisseau
  5

• Format integers for varying well name in run_batch_general

  #148 opened 10 months ago by fefossa
  0

• Improve logging

  #156 opened a year ago by ErinWeisbart
  0

• Add citation info

  #149 opened 10 months ago by ErinWeisbart
  4

• startCluster print error

  #157 opened a year ago by ErinWeisbart
  0

• Is /home/ubuntu/bucket mount point hardcoded?

  #152 opened a year ago by sooheon
  5

• Update cp-worker for readability?

  #141 opened 2 years ago by ErinWeisbart
  2

• Auto create Dashboards

  #128 opened 2 years ago by bethac07
  0

• if DOWNLOAD FILES, add warning post-csv filtering

  #136 opened 2 years ago by ErinWeisbart
  1

• Input/Output metadata mismatch behavior

  #124 opened 2 years ago by ErinWeisbart
  1

• Make DCP use roles better, not just passing around credentials

  #114 opened 2 years ago by bethac07
  1

• DOWNLOAD_FILES doesn't fully bypass S3FS

  #132 opened 2 years ago by ErinWeisbart
  1

• Update tag to 4.1.3?

  #125 opened 2 years ago by dlogan
  0

• ExportToDatabase and/or Path Mapping issues with DCP prevent batch data aggregation on AWS RDS - Workaround Added in Comments

  #129 opened 2 years ago by mamrrmam
  2

• dm.basesize doesn't work on new AMIs

  #121 opened 2 years ago by bethac07
  1

• Support for multi-subnet fleets.

  #115 opened 4 years ago by bethac07
  1

• Consider using pipeline.run() for CP4+

  #111 opened 2 years ago by bethac07
  0

• Workers stop retrieving messages from queue

  #100 opened 2 years ago by hirtem
  5

• == ERR move failed

  #123 opened 2 years ago by ErinWeisbart
  3

• Need to update queue code

  #133 opened 2 years ago by bethac07
  6

• Update Docker Image

  #127 opened 2 years ago by MrHassanMurtaza
  4

• Container Privilege Escalation and Read-Only Root File System -- is this needed?

  #120 opened 3 years ago by aupadh12
  1

• Make DCP give volumes names too

  #117 opened 4 years ago by bethac07
  1

• See if we can distinguish capacity errors from other errors on spot fleet startup

  #107 opened 4 years ago by bethac07
  1

• Distributed Cell profiler on AWS EKS

  #113 opened 4 years ago by mc35792
  1

• Add filter for CHECK_IF_DONE Bool

  #110 opened 4 years ago by ErinWeisbart
  1

• Print and log something when file not run due to CHECK_IF_DONE

  #105 opened 4 years ago by bethac07
  3

• Clean up old files even if done file reports failure

  #112 opened 4 years ago by bethac07
  1

• Images are not loaded for analysis

  #106 opened 4 years ago by Mindaugas-Jonikas
  1

• Mismatched metadata causes stuff not to be processed.

  #99 opened 4 years ago by bethac07
  1

• Userdata only injected in first launch spec object

  #101 opened 4 years ago by matthewchess
  0

• Error when running monitor on illumination correction

  #98 opened 4 years ago by bethac07
  5

• Check CP version running, not pipeline version, to set CPWorker command

  #96 opened 4 years ago by bethac07
  1