fefossa
Computational Biology | Image analysis. I am interested in quantitative image analysis and open-source tools!
Brazil
Pinned Repositories
scripts_notebooks_fossa
Scripts used inside notebooks for @fefossa projects. Mainly to generate PhD results.
CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
2023_Garcia-Fossa_Cruz_CurrentProtocols
Scripts for Current Protocols paper
2023_CourseImageAnalysis_NanoCell
Course about image analysis with materials in English and videos in Portuguese.
cellpainting-gallery
Cell Painting Gallery
CellProfiler
An open-source application for biological image analysis
CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
core
Core classes and components used by CellProfiler
DeepProfiler
Morphological profiling using deep learning
DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
fefossa's Repositories
fefossa/2023_CourseImageAnalysis_NanoCell
Course about image analysis with materials in English and videos in Portuguese.
fefossa/cellpainting-gallery
Cell Painting Gallery
fefossa/CellProfiler
An open-source application for biological image analysis
fefossa/CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
fefossa/core
Core classes and components used by CellProfiler
fefossa/DeepProfiler
Morphological profiling using deep learning
fefossa/DeepProfiler-handbook
Documentation for installing and using of DeepProfiler
fefossa/Distributed-CellProfiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
fefossa/fefossa.github.io
my personal and professional website
fefossa/LoadDataGenerator
Generates CSV files to be used in LoadData module (CellProfiler).
fefossa/profiling-recipe
Image-based Profiling Recipe
fefossa/pycytominer
cytominer python package
fefossa/scratchassays
Analysis of scratch and wound healing assays using Python. Data were extracted using PyScratch software.
fefossa/scripts_notebooks_fossa
Scripts used inside notebooks for @fefossa projects. Mainly to generate PhD results.
fefossa/ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy