CellProfiler/CellProfiler-plugins

Issues

• FilterObjects_StringMatch enhancements

  #255 opened 22 days ago by ErinWeisbart
  0

• Unit test failed

  #253 opened a month ago by binliunls
  0

• Cellprofiler 4.0.7 and CellPose 3.0.7 - RunCellpose is out of date

  #252 opened a month ago by kmshort
  1

• Pipeline frozen on post processing after RunCellpose with Docker

  #251 opened a month ago by emiglietta
  3

• RunCellPose Error

  #243 opened 5 months ago by ErinWeisbart
  6

• Error in sys.excepthook while running cellprofiler in headless mode with CellPose as a plugin

  #160 opened 2 years ago by bethac07
  2

• y.segmented = y_data unboundlocalerror: local variable 'y_data' referenced before assignment

  #249 opened 2 months ago by Pvannd
  1

• RunCellpose_Issues with GPU memory share setting

  #236 opened 6 months ago by sugan89
  4

• RunCellPose plugin script leads to not adding a working module

  #247 opened 4 months ago by MikeLippincott
  4

• RunCellpose unable to run headless

  #248 opened 4 months ago by jenna-tomkinson
  4

• RunOmnipose - HTTP error

  #241 opened 5 months ago by tsmith1711
  3

• RunCellpose error

  #244 opened 5 months ago by J-M-Dundee
  1

• Error in using custom model in RunCellpose

  #237 opened 6 months ago by sugan89
  1

• RunCellpose error on Mac related to CUDA

  #233 opened 7 months ago by olasabet
  0

• RunCellpose and CUDA out of memory

  #230 opened 8 months ago by obruck
  0

• RunDeepProfiler doesn't run in analysis mode on Windows, only on mac

  #208 opened a year ago by fefossa
  3

• RunCellpose enhancement: If detecting cells, ask for nuclei to establish parent/child relationships

  #227 opened 8 months ago by braymp
  0

• CalculateMoments run error

  #207 opened a year ago by ErinWeisbart
  1

• RunCellPose enhancement: Make Display Match IdentifyPrimaryObjects

  #224 opened 9 months ago by ErinWeisbart
  0

• RunCellpose error: AttributeError: 'RunCellpose' object has no attribute 'cellpose_ver'

  #223 opened 10 months ago by braymp
  0

• Error when running RunImageJScript on Windows

  #221 opened 10 months ago by sugan89
  3

• Issues running RunImageJScript plugin - pyimageJ version?

  #218 opened a year ago by bethac07
  13

• Error while running RunImageJScript plugin

  #217 opened a year ago by sugan89
  4

• Crop representative cells plugin

  #209 opened a year ago by fefossa
  0

• Ensure all plugins user-ready

  #189 opened a year ago by ErinWeisbart
  1

• CellProfiler crash upon RunCellPose on CPU

  #162 opened a year ago by julieaaj
  1

• TypeError in RunCellpose in GPU mode

  #154 opened 2 years ago by braymp
  5

• CalculateMoments and EnhancedMeasureTexture Display error

  #206 opened a year ago by ErinWeisbart
  0

• Installation and Functionality Problems with Cellpose Plugin

  #161 opened a year ago by jenna-tomkinson
  4

• Error when installing CellProfiler and its plugins from source on Apple M1 chip

  #176 opened 2 years ago by ML33M
  2

• Example pipeline for compensatecolors

  #179 opened 2 years ago by gwaybio
  8

• Plugins with external dependencies CAN work with binary CP distributions

  #166 opened a year ago by hinerm
  3

• Overhaul Plugins documentation

  #187 opened a year ago by ErinWeisbart
  1

• plugin added to module folder but doesn't see it in cellprofiler modules

  #146 opened a year ago by MariamFa
  1

• CP-plugins link is currently dead

  #195 opened a year ago by hinerm
  2

• classifypixelsunet weights file link

  #156 opened a year ago by solo00418
  1

• classifypixelsunet - file signature not found

  #180 opened a year ago by wynstep
  1

• stardist plugin does not free gpu memory

  #196 opened a year ago by sunyi000
  0

• RunCellpose warning for custom model not found

  #158 opened a year ago by fefossa
  1

• Implementing a DeepProfiler Plugin

  #171 opened 2 years ago by jenna-tomkinson
  5

• Create test pipelines

  #188 opened a year ago by ErinWeisbart
  0

• Functionality for RunCellpose to be used in an image-based analysis pipeline

  #177 opened 2 years ago by jenna-tomkinson
  4

• Apple M1 arm64: PackagesNotFoundError:- tensorflow-deps

  #175 opened 2 years ago by ML33M
  2

• Add "Remove Edge Masks" functionality to RunCellpose plugin

  #168 opened 2 years ago by jenna-tomkinson
  1

• Problems with installing runstardist in Cellprofiler

  #170 opened 2 years ago by BioMedMS
  1

• Cellpose Plugin -> Model Options for Cellpose 2.0 Unavailable

  #167 opened 2 years ago by jenna-tomkinson
  2

• Module names must match file/class names for plugins to work from compiled binary

  #165 opened 2 years ago by hinerm
  0

• Cellpose new version incompatible with runcellpose

  #147 opened 2 years ago by jesusdpa1
  0

• Cannot find my plugin in Other module category

  #145 opened 3 years ago by Tiany1Pan
  1

• RunImageJScript: a File input argument in FIji script should convert to both CP directory / filename settings

  #138 opened 3 years ago by alicelucas
  0